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The map label for this gene is 226223148

Identifier: 226223148

GI number: 226223148

Start: 557244

End: 558488

Strand: Direct

Name: 226223148

Synonym: Lm4b_00545

Alternate gene names: NA

Gene position: 557244-558488 (Clockwise)

Preceding gene: 226223147

Following gene: 226223152

Centisome position: 19.13

GC content: 31.16

Gene sequence:

>1245_bases
ATGAAAAAATTAGAAAAAAGCGTACCAGTAATCCGGTTTAAAGGCTTTTCTGAAGCTTGGGAACAGCGTAAGTTAGGTGA
AATTGCGAATTCCTTCGAATATGGGCTTAATGCAAGTTCTAAAACATATGATGGAGAAAATAAATATATTCGAATTACAG
ATATTGATGAAAGTTCTCATGTATTTAATCAAGATAATCTAACCTCCCCAGATATAAGTTTAGATAACCTAAATCATTAC
TTATTAGAAGAGGGTGATATTCTCTTAGCGAGAACAGGAGCAAGTACTGGAAAATCTTATTGTTACAATAAAATAGATGG
CAAAGTATTTTTTGCTGGGTTTCTAATAAGAGCAAAAATCAAACATGAATATAATGTCAGTTTTATCTTTCAAAGCACTT
TAACAGAAAGGTATAATAATTTTATTCAGGTTACTTCTCAGAGATCAGGCCAACCAGGAATTAATGCTCAAGAGTATGCT
AGATTTGCTTTATATATTCCTAAATTAAAAGAACAACAAAAAATAGGTGACTTTTTCAAACAACTAGACGACACTATCGC
TCTTCATCAGCGTAAGTTAGATACTTTGAAACAGATGAAGAAAGGACTCTTACAGCAAATGTTCCCTAAAAGCGAAGAGG
ATGTCCCAAAGATTCGTTTTGCTGATTTTGACGAAGAATGGTACCAGCGTAAGTTGGGAGAGATTTCAGATAAAGTTATC
GAAAAAAATAAAGAAAGTACATATTTTGAGACTTTAACCAATTCTGCCGAGTATGGAATTATAAGTCAACGTGAGTTTTT
TAATAAAGATATCTCTAATGAAAAAAATTTAAATGGATATTATATTGTCCGCGAGAATGATTTTGTTTATAATCCTCGTA
TTTCGAATTATGCACCTGTGGGGCCAATTAAGCGTAATAAACTAGGAAGAATTGGTATAGTCTCTCCTTTGTATTATGTT
TTCAGAACATTTGATACAAACCAAAGCTTCTTGGAATATTACTTTGATGGGACAGTTTGGCATAATTTTATGCTATTGAA
TGGTGATTCTGGGGCAAGAGCAGACCGATTTGCAATCAAAGATTCAGTTTTAAAAGAAATGCCTATTCCATATTCAACTT
TATATGAACAAGAAAAAATAAGTTTTTTTTTAGATGAGATAACTATCATTATAAATCTTCATCAAAATAAACTAAAGAAA
CTCTCTTCTCTAAAAAAAGCCTATTTACAAAATATGTTTATATAA

Upstream 100 bases:

>100_bases
ATATTAAAAAAGCCGAGACTGATTTTCTTGGTTTATTAGATGAATTAGCTGTTACTGCGGATACGAAGGAAATAATTGAA
GCTACTAAGGCGGTATTTCG

Downstream 100 bases:

>100_bases
TTTAATCCCCATCTATTCTTATGAGATGGGGATTATTTATCACATTAACATTGATAAATGGCGTATAATTTTATCATTAT
CTTGATTTTCCAATTCCTGA

Product: specificity determinant HsdS

Products: NA

Alternate protein names: Restriction System DNA Specificity Subunit; Restriction System DNA Specificity Domain Protein; Type I R/M System Specificity Subunit; Specificity Determinant HsdS; Restriction Endonuclease S Subunit; Restriction System DNA Specificity Domain; Type I Restriction- System S Subunit; Type I Restriction Endonuclease S Subunit; Type I Restriction Specificity Protein; Type I Site-Specific Deoxyribonuclease; Restriction System Specificity Subunit; Type I Restriction DNA Specificity Domain Protein; Type I Restriction- System S Protein; Type IC Specificity Subunit; Type I Site-Specific Deoxyribonucleacificity Subunit; Type I Restriction System S Subunit; Type I Restriction S Subunit; HsdS Protein; Type I Restriction- System Specificty Subunit; Type I Restriction- System DNA Specificity Subunit; Type Ic Restriction- System HsdS Subunit; Restriction- Type I S Subunit; HsdS Specificity Protein Of Type I Restriction- System; Type I Restriction- System Subunit; Type I RM System Specificity Subunit HsdIB; Type I Restriction System; Type I S-Subunit Protein; Type I Restriction/ System Specificity Subunit; Type I Restriction- System; Type I Restriction DNA Specificity Protein; Type I Restriction Specificity Subunit; Type I Restriction Hsds Subunit; Type I Restriction- S Subunit EcoA Family; Type I Restriction- S Subunit; HsdS Variable Domain-Containing Protein; Type I Restriction- S Subunit EcoA Family Protein; Type I Restriction- System Protein; Type I Restriction Hsds Subunit; Type I Restriction- System Subunit S; HsdS-Like Protein Of Type I Restriction- System; Type I Restriction- System Specificity Subunit S; Restriction System Subunit S; Type I Restriction- System Specificity Subunit Protein; Restriction Endonuclease S Subunits-Like Protein; Type I Restriction- System Specificty Subunit Truncated; Type I Restriction- System Specificity Protein; Restriction And System Specificity Protein; Type I Restriction- System Restriction Subunit; Type IC HsdS Subunit; Specificity Subunit

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKKLEKSVPVIRFKGFSEAWEQRKLGEIANSFEYGLNASSKTYDGENKYIRITDIDESSHVFNQDNLTSPDISLDNLNHY
LLEEGDILLARTGASTGKSYCYNKIDGKVFFAGFLIRAKIKHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQEYA
RFALYIPKLKEQQKIGDFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEISDKVI
EKNKESTYFETLTNSAEYGIISQREFFNKDISNEKNLNGYYIVRENDFVYNPRISNYAPVGPIKRNKLGRIGIVSPLYYV
FRTFDTNQSFLEYYFDGTVWHNFMLLNGDSGARADRFAIKDSVLKEMPIPYSTLYEQEKISFFLDEITIIINLHQNKLKK
LSSLKKAYLQNMFI

Sequences:

>Translated_414_residues
MKKLEKSVPVIRFKGFSEAWEQRKLGEIANSFEYGLNASSKTYDGENKYIRITDIDESSHVFNQDNLTSPDISLDNLNHY
LLEEGDILLARTGASTGKSYCYNKIDGKVFFAGFLIRAKIKHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQEYA
RFALYIPKLKEQQKIGDFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEISDKVI
EKNKESTYFETLTNSAEYGIISQREFFNKDISNEKNLNGYYIVRENDFVYNPRISNYAPVGPIKRNKLGRIGIVSPLYYV
FRTFDTNQSFLEYYFDGTVWHNFMLLNGDSGARADRFAIKDSVLKEMPIPYSTLYEQEKISFFLDEITIIINLHQNKLKK
LSSLKKAYLQNMFI
>Mature_414_residues
MKKLEKSVPVIRFKGFSEAWEQRKLGEIANSFEYGLNASSKTYDGENKYIRITDIDESSHVFNQDNLTSPDISLDNLNHY
LLEEGDILLARTGASTGKSYCYNKIDGKVFFAGFLIRAKIKHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQEYA
RFALYIPKLKEQQKIGDFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEISDKVI
EKNKESTYFETLTNSAEYGIISQREFFNKDISNEKNLNGYYIVRENDFVYNPRISNYAPVGPIKRNKLGRIGIVSPLYYV
FRTFDTNQSFLEYYFDGTVWHNFMLLNGDSGARADRFAIKDSVLKEMPIPYSTLYEQEKISFFLDEITIIINLHQNKLKK
LSSLKKAYLQNMFI

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48359; Mature: 48359

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLEKSVPVIRFKGFSEAWEQRKLGEIANSFEYGLNASSKTYDGENKYIRITDIDESSH
CCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
VFNQDNLTSPDISLDNLNHYLLEEGDILLARTGASTGKSYCYNKIDGKVFFAGFLIRAKI
CCCCCCCCCCCCCHHCCCHHEECCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEEEEE
KHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQEYARFALYIPKLKEQQKIGDFFK
CCCCCEEEEEHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
QLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEISDKVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
EKNKESTYFETLTNSAEYGIISQREFFNKDISNEKNLNGYYIVRENDFVYNPRISNYAPV
HCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCCCCCC
GPIKRNKLGRIGIVSPLYYVFRTFDTNQSFLEYYFDGTVWHNFMLLNGDSGARADRFAIK
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHH
DSVLKEMPIPYSTLYEQEKISFFLDEITIIINLHQNKLKKLSSLKKAYLQNMFI
HHHHHHCCCCHHHHHHHHHHHHHEEEEEEEEEECHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLEKSVPVIRFKGFSEAWEQRKLGEIANSFEYGLNASSKTYDGENKYIRITDIDESSH
CCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
VFNQDNLTSPDISLDNLNHYLLEEGDILLARTGASTGKSYCYNKIDGKVFFAGFLIRAKI
CCCCCCCCCCCCCHHCCCHHEECCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEEEEE
KHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQEYARFALYIPKLKEQQKIGDFFK
CCCCCEEEEEHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
QLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEISDKVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
EKNKESTYFETLTNSAEYGIISQREFFNKDISNEKNLNGYYIVRENDFVYNPRISNYAPV
HCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCCCCCC
GPIKRNKLGRIGIVSPLYYVFRTFDTNQSFLEYYFDGTVWHNFMLLNGDSGARADRFAIK
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHH
DSVLKEMPIPYSTLYEQEKISFFLDEITIIINLHQNKLKKLSSLKKAYLQNMFI
HHHHHHCCCCHHHHHHHHHHHHHEEEEEEEEEECHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA