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The map label for this gene is rpiB [H]

Identifier: 226222971

GI number: 226222971

Start: 374693

End: 375139

Strand: Reverse

Name: rpiB [H]

Synonym: Lm4b_00363

Alternate gene names: 226222971

Gene position: 375139-374693 (Counterclockwise)

Preceding gene: 226222972

Following gene: 226222970

Centisome position: 12.88

GC content: 40.04

Gene sequence:

>447_bases
ATGAAAATCGCAATTGGTTGTGACGAAATGGGTTACGAACTAAAACAAACCCTCATCACACGTTTAAAGGAGAAAAATAT
TGAGTTTACTGATTTCGGCAGTTTTGAAAACGAAAAAGTACTTTATCCAAGTATTGCCGAAAAAGTAGCACTAGAAGTTA
AAAACAACGATTATGACCGAGGGATCCTTATTTGCGGTACAGGTATTGGAATGGCCATTACAGCAAACAAAATTCACGGC
ATTCGCGCAGCACAAATTCATGATTCTTATTCAGCAGAACGCGCAAGAAAAAGTAACGACGCACATATTATGACCATGGG
AGCTCTAGTAATCGGGCCATCCCTTGCCGTATCTCTACTTGATACATGGCTGGATAGCGACTTTTCGGGCGGACGCTCCC
AAGCAAAAGTAGATTTAATGGAAGAAATCGACCAAAAAAATAGATAA

Upstream 100 bases:

>100_bases
AAAAAATGTCGATGGTTTATTCGTCGGAAGATTTGGCCATAAACCGCAAAATTTTGCCGACATTGTTTCTATTGTTAGCA
AAACGAAAGGATGAGTTAGT

Downstream 100 bases:

>100_bases
AAAATTTATTGGAGGTAATGAAAAATGACTTTTAAAGGTTTTGATAAAGATTTTAACATTACAGACAAAGTAGCCGTGGT
AACTGGGGCAGCAAGCGGGA

Product: sugar-phosphate isomerase

Products: NA

Alternate protein names: Phosphoriboisomerase B [H]

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG
IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR

Sequences:

>Translated_148_residues
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG
IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR
>Mature_148_residues
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG
IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR

Specific function: In addition to its activity on D-ribose 5-phosphate it probably also has activity on D-allose 6-phosphate [H]

COG id: COG0698

COG function: function code G; Ribose 5-phosphate isomerase RpiB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacAB/rpiB family [H]

Homologues:

Organism=Escherichia coli, GI1790528, Length=145, Percent_Identity=42.0689655172414, Blast_Score=136, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003500
- InterPro:   IPR004785 [H]

Pfam domain/function: PF02502 LacAB_rpiB [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 16383; Mature: 16383

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPSIAEKVALEVKNNDYDR
CEEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECHHHHHHEEEEECCCCCCC
GILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLL
EEEEEECCCCEEEEECCCCCEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCHHHHHHHH
DTWLDSDFSGGRSQAKVDLMEEIDQKNR
HHHHCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPSIAEKVALEVKNNDYDR
CEEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECHHHHHHEEEEECCCCCCC
GILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLL
EEEEEECCCCEEEEECCCCCEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCHHHHHHHH
DTWLDSDFSGGRSQAKVDLMEEIDQKNR
HHHHCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8576032; 7610040; 9278503; 1840580; 7984428; 9401019 [H]