Click here to switch to the map view.

The map label for this gene is yabE [H]

Identifier: 226222815

GI number: 226222815

Start: 187390

End: 188604

Strand: Direct

Name: yabE [H]

Synonym: Lm4b_00183

Alternate gene names: 226222815

Gene position: 187390-188604 (Clockwise)

Preceding gene: 226222814

Following gene: 226222816

Centisome position: 6.43

GC content: 35.8

Gene sequence:

>1215_bases
ATGACCATGGAAAACAGCAGTAACGTAGCCCAATCATCAAAATGGAAATTACCAATCATGATTGCAGGATTTGTTATTGT
AGTAGCATTGGTTTTTTATTTCGTTTTCGAAGGAACTAAAAACGATATCACTATAGTAAATGCTGGTGAAAAAATTGAAT
CAAGAACACATGCGAAAACTGTTTCAGAAGCATTAGACGAAGCAGGTATTAAAGTAAGTGAACGCGATGAAATTGCGCCA
GGCAAAAATGCAGAAATCAAAGACGGCATGGAAATTAAATATTTGCCAGCTCGTCAAATTACAATAAATGATAATGGTAC
TAAAAAAGACGTTTGGAGCACAAAAGCAAACGTAGCAGACTTGCTTAAAGATGAAAATATTACAACTCGTCCGCAAGATG
TATTAAACGTAGCATTAGATACTAAATTGAAAAATGGCCTTGAAGTTAACATTAATCGTGCCATTCAACTTTCCTTACAA
AACGGAGCAAAAAAAGATACAGTATGGACAACAAAAACAAAAGTTAGTGATTTACTAGCTGAGAAAAATATTAAACTTGA
TCAAGATGACCGTGTGTCACCTGCAAAAGACAGTAACTTAAAAGAAAAAATGACTGTAGAAGTTACATATGTCAATTCAA
AAGCAGAAAAGAAAAATGAACAAGTTAAATTCGAAACAGTATATAAAGAAGATGATAGCCTAAACAAAGGCGTTGAAAAA
GTCGTTCAAGAAGGTAAAAACGGCGAAAAAGTTGTTGAGTATAAAGTAACATTTGAAAATGGCAAAGAGAAAAAACGTGA
TGTCATTAAAGAAAATGTCACTTCTAAAAAAACTGATAAAGTAGTTGTACGTGGCACGAAAGAAAAAGTGGTAGCAACAC
CAGTTTCTAACGTATCTACTCCAAGTACAACGTCATCATCATCATCAACTCCATCAGGTGGTAAAACATACAGAATGGAA
TCTACTGCATATTCAGGTGGCGGTACTACAGCTTATGGTATCAACCTAAGTGCCAACCCTGGACTAAAAGTAATTGCGGT
TGATCCACGAATTATTCCACTTGGCTCTAAAGTTTGGGTTGAGGGATACGGAGAAGCAATCGCTGGAGATACTGGCGGCG
CTATCAAAGGAAATATCGTTGACGTGTATTTCCCAAATGAAAGTCAGTGCTATTCATGGGGTAGAAGAATGGTGACTGTC
AAAGTGTTAAACTAA

Upstream 100 bases:

>100_bases
TTGTTAAAGTTTGCGAAGGTGTGAACAATCTGTATAAAAAATTGACAGTTCTTCCCTCCCCTGTATATAATCACTAGCGA
AGTAGAAAGGGGAGAAATAC

Downstream 100 bases:

>100_bases
ATTCGTATAAAAACGAGGCTGACTCATAGGGCCTCGTTTTTTCTTTGTCCAAAATGTGGTATGATATATTTACTTATTTT
ATAAAAAAGGATGTAGTAAT

Product: YabE protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAP
GKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQ
NGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEK
VVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSKKTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSTPSGGKTYRME
STAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTV
KVLN

Sequences:

>Translated_404_residues
MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAP
GKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQ
NGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEK
VVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSKKTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSTPSGGKTYRME
STAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTV
KVLN
>Mature_403_residues
TMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPG
KNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQN
GAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEKV
VQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSKKTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSTPSGGKTYRMES
TAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTVK
VLN

Specific function: Unknown

COG id: COG3583

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G5 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR007137
- InterPro:   IPR011098 [H]

Pfam domain/function: PF06725 3D; PF03990 DUF348; PF07501 G5 [H]

EC number: NA

Molecular weight: Translated: 44227; Mature: 44095

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
VSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVAD
HHHHHHHHCCEECCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHCHHHHHH
LLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLA
HHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCEEEEHHHHHHHHH
EKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEK
HCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHH
VVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSKKTDKVVVRGTKEKVVATPVSNVST
HHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCC
PSTTSSSSSTPSGGKTYRMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWV
CCCCCCCCCCCCCCEEEEEECCEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCEEEE
EGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTVKVLN
ECCCCEECCCCCCCEECCEEEEEECCCHHHHHCCCEEEEEEEEC
>Mature Secondary Structure 
TMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
VSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVAD
HHHHHHHHCCEECCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHCHHHHHH
LLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLA
HHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCEEEEHHHHHHHHH
EKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEK
HCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHH
VVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSKKTDKVVVRGTKEKVVATPVSNVST
HHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCC
PSTTSSSSSTPSGGKTYRMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWV
CCCCCCCCCCCCCCEEEEEECCEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCEEEE
EGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTVKVLN
ECCCCEECCCCCCCEECCEEEEEECCCHHHHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]