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The map label for this gene is yabF [H]

Identifier: 226222816

GI number: 226222816

Start: 188706

End: 189281

Strand: Direct

Name: yabF [H]

Synonym: Lm4b_00184

Alternate gene names: 226222816

Gene position: 188706-189281 (Clockwise)

Preceding gene: 226222815

Following gene: 226222817

Centisome position: 6.48

GC content: 41.84

Gene sequence:

>576_bases
ATGAACGGGAAGCCTGTAATACATGAATTTATAGTCGTAGAAGGACGGGACGATACAACGGCAATTAATCGTTCAGTTAT
TGCTGATACCATTGAGACTAATGGATCTGCCCTTTCACAAGAAACAATAGAAAAGATTAGACATGCACAAGAACTTCGCG
GCGTTATTATTTTTACAGATCCAGATTTTCCCGGTGAAAAAATCCGAAAACAAATTGACTCAGCGGTACCTGGCTGTAAA
CACGCTTTTATCAATCGCCAAGACGCTTTGCCAAAAGCAGGTCGTGGCCTTGGAGTGGAACATGCCAGTAGCGCTAATAT
TCGGGAAGCACTCGAAAACTTCCATACAAGTGGGACGCCTGCAGAAAAACAATTTATCTCCAAAGATATTCTTATTCATC
TCGGTCTTCTTGGAGGAGCGGGAGCGAAAGAACGCCGAGAAAAAATCGGTAATATACTAAAAATTGGCTATACAAACGGA
AAACAACTGCAAACCAGACTAGAATCATTTGCAATCAGTGAAGACCAGTTAGTAGCCGCGTGCCAAAAGATTATGCAGGA
GGAAGAAAATGAGTAA

Upstream 100 bases:

>100_bases
TTCGTATAAAAACGAGGCTGACTCATAGGGCCTCGTTTTTTCTTTGTCCAAAATGTGGTATGATATATTTACTTATTTTA
TAAAAAAGGATGTAGTAATT

Downstream 100 bases:

>100_bases
AGATATTGCAACTCCCGGAAGAACGACAGAAATCCTAAAGAAGTATGGTTTCTTATTTAAAAAAAGTCTGGGTCAAAACT
TTTTAATCGACAGTAACATT

Product: YabF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCK
HAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
KQLQTRLESFAISEDQLVAACQKIMQEEENE

Sequences:

>Translated_191_residues
MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCK
HAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
KQLQTRLESFAISEDQLVAACQKIMQEEENE
>Mature_191_residues
MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCK
HAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
KQLQTRLESFAISEDQLVAACQKIMQEEENE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20968; Mature: 20968

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQELRGVIIFTD
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEC
PDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
AEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNGKQLQTRLESFAISEDQLVAA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHHH
CQKIMQEEENE
HHHHHHHHCCC
>Mature Secondary Structure
MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQELRGVIIFTD
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEC
PDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
AEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNGKQLQTRLESFAISEDQLVAA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHHH
CQKIMQEEENE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]