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The map label for this gene is yesO [H]

Identifier: 226222810

GI number: 226222810

Start: 177628

End: 178884

Strand: Direct

Name: yesO [H]

Synonym: Lm4b_00178

Alternate gene names: 226222810

Gene position: 177628-178884 (Clockwise)

Preceding gene: 226222809

Following gene: 226222811

Centisome position: 6.1

GC content: 37.31

Gene sequence:

>1257_bases
ATGAAAAAAGGTTTATTATTGTTAATGGTAGTTGTACTGTCTGTATTTGGTCTTTCGGCTTGCGGCGGTGGCAGTAGTAG
TGGCGATAAAACAGAAATAACGTATTATCAATTCTCTGCACCAGCTGATGGAAAAGCACTTGATGAAATGGTAAAAGAAT
TTGAAAAGCAAAACCCTGATATTAAAGTGAACGTTCAAACAATCGCATTTAACGACTATTTCACTAAACTACAAACACAA
ATCGCAGGTGGAGATGCTCCGGATGCCTTTGAACTTAACTACGAAACATTCATGCAATATGCTGAAAAAGGTGTACTTGC
AGATTTAACAAGCTATATCGAAAAAGATAAAGATTTTGATCCATCTACACTTAACAAACAAGCCTACGATGCTTTCAAAT
ATGATGGCAAACAATACGGTATGGTAGAAAGTTTCTCCAACGTTGTAACAATTTACAATAAAGACCTTTTTGATAAAGCC
GGCGTTGAATATCCGACAGCTGACTGGACTTGGAAAGACGAAGAAGCGGCAGCAAAAAAATTAACAGATGCTAAAAATAA
AGTTTGGGGAACTTCCCAACCAGTAACAATGAACGAATTCTACAAAGTAGCAGCGCAAAATGGTGGTTCGATTTTCAACG
AAGACTTAACGAAAACAACTATCAACAGTCCTGAAAATGTGGCAGCATTAACTCACTTAACAAATGAAGTAACAGATTCA
AAAGTGGCGCCTTCACCAGCTGATTTATCTGGCCAATTACCAGAAGATTTATTTATGAATGGTCAAATCGCAATGCTTCA
CACCGGTATTTGGTTGTTCGATATGTTCCAAGATGCTCCGTTCAAATGGGATGTACAAGTAGAAGCAGGAAACACGCAAA
AAGCAACTCACTTCTTCGCAAACGGCATTGGTGTTTCTAAAGACTCCGATAAAAAAGAAGCAGCTTTCAAATTCGCTTCC
TTCATGAGCGCGAACGAAGAAGCAGCGAAAATCAGAATTGATAATAACTGGGAACTTCCAGCGACTGAAAACAAAGAGAT
TTTACAACCATATTTAGATGCAACTCCTCCAGATAACAGAGAAGCAGTATTCGAATCTCTACAATATATGGTATTACCTC
CAGTTGTAAAAGATTGGAACAAAATCAGTGATTATACAAACTCTGAATTCGAAAAAGTATTAAATGGCGATTCTACTCCA
GAAAAAGCACTGAAAAACAGCGAAGACAACATCAACAAAACAATGGGATTTAAATAA

Upstream 100 bases:

>100_bases
GATTCTAGCAGTGTACCTTTTTGCTCAAAAATATTTCATCCAAGGAATGGCAATGAGCGGAATGAAAGAATAAAAAACCA
ACAAAAAAGGAGTGTTACAA

Downstream 100 bases:

>100_bases
GTAAAACGAGTGGCAGGGACGTTTGTAAGTATCTTTACAAATTAGACTGCCACTTTAGTATATCCAAGAAAGGAAATAGA
ACATGTCTAAATTCACAAAA

Product: sugar ABC transporter, sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQ
IAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTKTTINSPENVAALTHLTNEVTDS
KVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFAS
FMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTP
EKALKNSEDNINKTMGFK

Sequences:

>Translated_418_residues
MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQ
IAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTKTTINSPENVAALTHLTNEVTDS
KVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFAS
FMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTP
EKALKNSEDNINKTMGFK
>Mature_418_residues
MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQ
IAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTKTTINSPENVAALTHLTNEVTDS
KVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFAS
FMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTP
EKALKNSEDNINKTMGFK

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=330, Percent_Identity=24.8484848484848, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46575; Mature: 46575

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPD
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC
IKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFD
EEEEEEEEEECHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHCCCCCC
PSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTADWTWKDEEAAAKK
CCCCCHHHHHHHHCCCCCCCHHHHHCCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHHHH
LTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTKTTINSPENVAALTHLTNEVTDS
HHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHCCCCCHHHHHHHHHHHHHCCC
KVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNTQKATHFFA
CCCCCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
NGIGVSKDSDKKEAAFKFASFMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNR
CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCH
EAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTPEKALKNSEDNINKTMGFK
HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCHHHHCCCC
>Mature Secondary Structure
MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPD
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC
IKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFD
EEEEEEEEEECHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHCCCCCC
PSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTADWTWKDEEAAAKK
CCCCCHHHHHHHHCCCCCCCHHHHHCCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHHHH
LTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTKTTINSPENVAALTHLTNEVTDS
HHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHCCCCCHHHHHHHHHHHHHCCC
KVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNTQKATHFFA
CCCCCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
NGIGVSKDSDKKEAAFKFASFMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNR
CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCH
EAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTPEKALKNSEDNINKTMGFK
HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]