Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 226222809

GI number: 226222809

Start: 176752

End: 177600

Strand: Direct

Name: araQ [H]

Synonym: Lm4b_00177

Alternate gene names: 226222809

Gene position: 176752-177600 (Clockwise)

Preceding gene: 226222808

Following gene: 226222810

Centisome position: 6.07

GC content: 38.28

Gene sequence:

>849_bases
ATGAAAACAGAAAAAAGTGGTTCACCAAAATGGCAACTATTTAAAAATATTCTTACCTATACAATCATCTGTCTTGGTGG
AATTATCATGCTTATGCCGTTTGTTTGGATGGTATCAACTGCATTCAAAACAGGCGCAGCGAACATGGTATTACCGCCGC
AATTTATTCCTAAAGAACCGACAACTGCGAACTTCACTCAAGTATTTGAAATGTTCCCAATGTTGCGATTTTTAGTTAAC
TCCGTGGTCGTTGCAGTTGTAACGACACTTGGTCAAATGCTGTTTTGTTCAATGGCAGCGTATGCTTTTGCCAGAATTCC
TTTCTGGGGTCGCGATAAATTATTTTTACTTTACTTAGCAACAATGATGGTGCCAGCTCAAGTTACAATGATTCCGCAGT
TTATCTTGATGAAACAATTTGGCTGGTTGGATTCGTATGCTGGTTTGATTGTACCCGCACTATTCAGCGTTTTTGGGACA
TTCTTATTACGTCAAGCATTCATGGGAATTCCGAAAGAGCTAGAAGAAGCTGCATTCATGGACGGTGCCAATCATTTTAC
TATTTTCCGAAAAGTTATCTTACCACTTGCAAAACCTACTTTTGCGACACTCGGAATTTTAACTTTTATGCAATCTTGGA
ACAGTTATTTATGGCCATTAATCGTGACAAGTTCACAAGAAATGGCAACTTTACCTTTAGGATTATCTCTTTTACAAGGT
AGATATGGAACGAATTACGGCTTAATGATGGCGGGTGTACTAATTAGTGTTATCCCGATTCTAGCAGTGTACCTTTTTGC
TCAAAAATATTTCATCCAAGGAATGGCAATGAGCGGAATGAAAGAATAA

Upstream 100 bases:

>100_bases
AAATGGGCTATGCTTCCGCGATGAGTTGGATATTGTTTATTGTTATTTTCATCATTACAATTATTCAAAATAAACTTCAA
AAAAGGTGGTCCAATTACTA

Downstream 100 bases:

>100_bases
AAAACCAACAAAAAAGGAGTGTTACAAATGAAAAAAGGTTTATTATTGTTAATGGTAGTTGTACTGTCTGTATTTGGTCT
TTCGGCTTGCGGCGGTGGCA

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVN
SVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQG
RYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE

Sequences:

>Translated_282_residues
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVN
SVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQG
RYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
>Mature_282_residues
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVN
SVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQG
RYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=271, Percent_Identity=31.3653136531365, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787571, Length=258, Percent_Identity=31.0077519379845, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790464, Length=219, Percent_Identity=30.5936073059361, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31636; Mature: 31636

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
7.8 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
7.8 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TTANFTQVFEMFPMLRFLVNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMGIPKELEEAAFM
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQG
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHHHHHC
RYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TTANFTQVFEMFPMLRFLVNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMGIPKELEEAAFM
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQG
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHHHHHC
RYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]