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The map label for this gene is abrB [H]

Identifier: 226222801

GI number: 226222801

Start: 167258

End: 167542

Strand: Reverse

Name: abrB [H]

Synonym: Lm4b_00169

Alternate gene names: 226222801

Gene position: 167542-167258 (Counterclockwise)

Preceding gene: 226222804

Following gene: 226222794

Centisome position: 5.75

GC content: 36.49

Gene sequence:

>285_bases
ATGAAATCAACTGGAATGGTAAGAAAAATCGACGAACTTGGTCGTGTGGTTATACCGATTGAAATAAGAAGAACGATGAA
CCTAAATGTAAAAGACCCTTTAGAAATATTTACAGATGAAGATGCGATTGTATTGAAAAAGTATTCCGCTGGCTTGGTTT
GTGACGTTACCGGAGAATTTTCTGTTGATAACAAGAAATTTGTGGACGGTAAATTGACACTCAGTAAAGAAGGCGCTGCG
GAATTAATGGAAGAAATTAAACGCCGCTTTGGTGATACATTATAA

Upstream 100 bases:

>100_bases
AATTCTTCTGCTTATGGTCTATACCCTTTTCCTCATGAAATCATTCCTATTCCCGTAATTATCTGTTAAAATGAATTAAA
ATTATCAAGAAGGTGAGAAA

Downstream 100 bases:

>100_bases
AAAAAATCATGCGCGAGTTCCCATTAAAGGATTCGCGCATGATTTTATTTTATTTCATGATAAGCAGAGTAAACTTCTCG
TTTTGGTAAATTTCTCGCTT

Product: transcription regulatory protein AbrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIVLKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAA
ELMEEIKRRFGDTL

Sequences:

>Translated_94_residues
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIVLKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAA
ELMEEIKRRFGDTL
>Mature_94_residues
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIVLKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAA
ELMEEIKRRFGDTL

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10577; Mature: 10577

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIVLKKYSAGLVCDVTGEF
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCCEEECCCCEEEEEECCCCEEEEECCCC
SVDNKKFVDGKLTLSKEGAAELMEEIKRRFGDTL
CCCCCEEECCEEEECCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIVLKKYSAGLVCDVTGEF
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCCEEECCCCEEEEEECCCCEEEEECCCC
SVDNKKFVDGKLTLSKEGAAELMEEIKRRFGDTL
CCCCCEEECCEEEECCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]