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The map label for this gene is xerC [H]

Identifier: 225861217

GI number: 225861217

Start: 1251092

End: 1252057

Strand: Reverse

Name: xerC [H]

Synonym: SPT_1310

Alternate gene names: 225861217

Gene position: 1252057-1251092 (Counterclockwise)

Preceding gene: 225861218

Following gene: 225861216

Centisome position: 59.28

GC content: 36.13

Gene sequence:

>966_bases
ATGGAATCAAAAGTTACAATTATCATGCAAGAAATGTTACCTCTTTTAAATAATGAACAATTACTAGCGTTGAGAGAGAG
TTTAGAACATCATCTAGTAGACGGAAAAAAGCAGCAGAAGTATTCGAATAATAACCTGTTGCAACTATTTATTACCGCCA
AGCAGGTAGAGGGCTGTAGCTCAAAAACAATTCGTTATTACCAGAGGACGATTGAAAACTTGTTTAATGCTATTAAAGAG
TCTGTGACACAACTCACAACAGATGATTTAAGGAGTTATTTAGCAAATTACCAGTCTGAAAAGGATTGTAGTAAGGCAAA
TTTAGACAATATTAGGCGTATATTGTCTTCTTTTTTTGCTTGGCTTGAGCAAGAGGAATATATCATTAAAAATCCCATTC
GACGGATAAAGAAAATTAAGACTGAGCAAAATGTGAAGGAAACTTATACTGATGAACATTTGGAAATTATGCGTGATAAC
TGTGAAAATTTGAGAGATTTGGCAATAATAGACCTACTAGCATCGACAGGTATGCGTGTAGGGGAGCTTGTACAGTTGAA
TCGTTCAGATATTGATTTTGAAAACAGAGAGTGTGTTGTCTTTGGTAAAGGAAAGAAGGAGAGACCAGTATATTTTGATG
CTCGGACGAAAATTCATTTAAGAAATTATCTTAACGACAGAAAAGATAGTCACCCTGCTCTTTTTGTAACGCTAGTTGGA
AAAGTCCAGAGACTTGGAATTGCTGGTGTAGAGATTCGCTTAAGAAAGTTAGGAGACAAACTCGGCATACAAAAGGTTCA
CCCACATAAGTTCAGAAGAACTTTAGCGACTAAGGCAATTGATAAAGGTATGCCTATCGAACAAGTCCAAAAACTGCTAG
GTCATAGCAAGATTGACACAACCCTGGCCTATGCCATGGTCAATCAAAATAATGTCAAGCATTCACACCAAAAATTCATC
TCTTAA

Upstream 100 bases:

>100_bases
GAATGAGCACAAGAAAATAAATGAACAGACAATATTAGAATTCTGTAATGCAGAAACTGATATTGTCTCTTTTTATTGAT
GAATAAGAAAGTGAGAAATT

Downstream 100 bases:

>100_bases
AAGCAAATCCCGATATTCCGAGGAGGTGGTTGCATGAAGAAAGTGAAATTAGGGCAAGTGGCTACTTTTATCAATGGCTA
TGCTTTTAAACCTCAAGATT

Product: integrase/recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAIKE
SVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDN
CENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVG
KVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKFI
S

Sequences:

>Translated_321_residues
MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAIKE
SVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDN
CENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVG
KVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKFI
S
>Mature_321_residues
MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAIKE
SVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDN
CENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVG
KVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKFI
S

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=264, Percent_Identity=30.3030303030303, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=28.0276816608997, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37311; Mature: 37311

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLQLFITAKQVEGCS
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEEHHHHCCCC
SKTIRYYQRTIENLFNAIKESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHH
WLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDNCENLRDLAIIDLLASTGMRV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVG
HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCEEHHHHHH
KVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDT
HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
TLAYAMVNQNNVKHSHQKFIS
HHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure
MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLQLFITAKQVEGCS
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEEHHHHCCCC
SKTIRYYQRTIENLFNAIKESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHH
WLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDNCENLRDLAIIDLLASTGMRV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVG
HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCEEHHHHHH
KVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDT
HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
TLAYAMVNQNNVKHSHQKFIS
HHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA