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The map label for this gene is ddpA [H]

Identifier: 225686841

GI number: 225686841

Start: 1052874

End: 1054430

Strand: Reverse

Name: ddpA [H]

Synonym: BMEA_B1080

Alternate gene names: 225686841

Gene position: 1054430-1052874 (Counterclockwise)

Preceding gene: 225686842

Following gene: 225686840

Centisome position: 88.94

GC content: 54.4

Gene sequence:

>1557_bases
ATGCTACATCTGGGAACATTCGTCCGTCCTGCATCTCGCCGGGCCATCATCTCATCGGTCTTGCTCGCAATCGCATTCCT
GCCTGTCACCGCAGTGGCGCAAGACAGTTCTGTCTTCGTTTATGCCGACGCCGGTGAACCCACGACACTGGACCCGGCCC
GTACCAATACCAACTATGAGTTCACGGTCACGCGCAGTGTTTATGACCGGTTGATCAACTATGATCTCGACGACCCTTCC
AGCCTGCAGCCAGGGCTAGCCGTGGAATGGACACAGGACGGGAATGCATGGATTGTCAAACTGCGCGAGGGGGTCAAGTT
TCATGATGGCACCTCATTCGATGCGGAAGACGTGAAGGCAACTCTCGACCGTTTGCTGAAGCTCAAGCTGGGGCAATCCT
ATCTGGTTTCCGAAATCACCGGTGTCACTGTGATCGACCCCGCTACCGTGCGGATCGAAACCGCTCAACCCAATGTCTTC
CTGCCTGCGAATCTGTCGAAGATCGAAATGCTTTCATCCGATGATATCGCGGCACATGGCGGCGAAGGCGACACCTTCTT
TGCCGAAGGAGGAAACGGCACGGGGCCTTATAAGCTCGTAAACTGGAAGCGCGGTGTTCAAATAGAGCTGGAACGTAACA
CCGACTGGTGGGGTAAATTCTCTGATAAGCCCTTTGATCGGATCGTCGACCGCTTCGTGGAAGATGGAGCCAACCGCGCG
CGCGGCGTGGAAGGCGGCGAGTTCGATATGGCTAACTTCATTCCCCTGGACGATGCGATCCGCATTGCCGCTCAGCCGGG
CTTCAAGCTGATCGAAGGAAACAATCTGTGGGCCTGGCCAGCCATCTATCTCAATACTCAAAAGGCTCCCACAGACAATG
CCGATTTCCGCAAGGCGCTCGTAAAGGCTTTCGATTATCAGGCCATGCTCGATTTCTCACATGGCAAAGCCACGACGCCA
AGCGGCCCCATACCCGATTGGTTCCCCTTGAGCCCCGAAGCGCAGGAACCCGAAATTGTCACCAATCTTGACGAGGCGTC
TGCCGCACTTGAAAAGTCCGGTATTCAAAATGCCACGATGAGCTGCTCCATTCCTGCGGGTTTTCCCGAATTCCGCTTTG
CGGCGACCATTTTGCAAGCCAGCGCGGCACAACTCGGTGTCACCGTAGAGGTTGACGAACGTCCGACTGTTGAAGCGCTG
AAAGCGATCAAGAATAATGAAACCAACTGTTTTGCGATAGGCAATGCCAATCTGTCGCCTGCCGATGCCACGAAATTCTT
CGCGGCACATTATTCCAGGAATGGTCACTACAATGCAGCTAAGCTTGATCTGCCAGAGCTTGAAAAAATCATAGCTGATA
TGCCCACGGTCACGCAACAAAGCGAACGTGCGGCACAGCTAAAACGGGCCTTCGAACTGATCGTCGACAGTAATGCTATC
ATTTGGACCGCCCGCCCGAAAACGCTGGTAATCCAGCCAGACCGCATCACCGGCTATCGAGTTGACCCGGCCGAGTATAT
CAACATTCGTTTCTGGGAAATCGGACAGGCCAAGTAA

Upstream 100 bases:

>100_bases
CGTTGATCCGTCATCTCAAATCCGCAACCGGATAAACGATCTCATTCACATCCAGAACCACATAAGCGCCGGCCAAAGGC
GCATCAGGGGAACATGAACA

Downstream 100 bases:

>100_bases
CCCTTCCGCGACCAACCAATGAATTCGGGGGCCCAATGGTAGCCTTTCTTGCAAAACGTCTGGGTTGGGGGCTGGCGGTT
CTGCTCAGCGTGGGAGTTCT

Product: glutathione-binding protein GsiB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MLHLGTFVRPASRRAIISSVLLAIAFLPVTAVAQDSSVFVYADAGEPTTLDPARTNTNYEFTVTRSVYDRLINYDLDDPS
SLQPGLAVEWTQDGNAWIVKLREGVKFHDGTSFDAEDVKATLDRLLKLKLGQSYLVSEITGVTVIDPATVRIETAQPNVF
LPANLSKIEMLSSDDIAAHGGEGDTFFAEGGNGTGPYKLVNWKRGVQIELERNTDWWGKFSDKPFDRIVDRFVEDGANRA
RGVEGGEFDMANFIPLDDAIRIAAQPGFKLIEGNNLWAWPAIYLNTQKAPTDNADFRKALVKAFDYQAMLDFSHGKATTP
SGPIPDWFPLSPEAQEPEIVTNLDEASAALEKSGIQNATMSCSIPAGFPEFRFAATILQASAAQLGVTVEVDERPTVEAL
KAIKNNETNCFAIGNANLSPADATKFFAAHYSRNGHYNAAKLDLPELEKIIADMPTVTQQSERAAQLKRAFELIVDSNAI
IWTARPKTLVIQPDRITGYRVDPAEYINIRFWEIGQAK

Sequences:

>Translated_518_residues
MLHLGTFVRPASRRAIISSVLLAIAFLPVTAVAQDSSVFVYADAGEPTTLDPARTNTNYEFTVTRSVYDRLINYDLDDPS
SLQPGLAVEWTQDGNAWIVKLREGVKFHDGTSFDAEDVKATLDRLLKLKLGQSYLVSEITGVTVIDPATVRIETAQPNVF
LPANLSKIEMLSSDDIAAHGGEGDTFFAEGGNGTGPYKLVNWKRGVQIELERNTDWWGKFSDKPFDRIVDRFVEDGANRA
RGVEGGEFDMANFIPLDDAIRIAAQPGFKLIEGNNLWAWPAIYLNTQKAPTDNADFRKALVKAFDYQAMLDFSHGKATTP
SGPIPDWFPLSPEAQEPEIVTNLDEASAALEKSGIQNATMSCSIPAGFPEFRFAATILQASAAQLGVTVEVDERPTVEAL
KAIKNNETNCFAIGNANLSPADATKFFAAHYSRNGHYNAAKLDLPELEKIIADMPTVTQQSERAAQLKRAFELIVDSNAI
IWTARPKTLVIQPDRITGYRVDPAEYINIRFWEIGQAK
>Mature_518_residues
MLHLGTFVRPASRRAIISSVLLAIAFLPVTAVAQDSSVFVYADAGEPTTLDPARTNTNYEFTVTRSVYDRLINYDLDDPS
SLQPGLAVEWTQDGNAWIVKLREGVKFHDGTSFDAEDVKATLDRLLKLKLGQSYLVSEITGVTVIDPATVRIETAQPNVF
LPANLSKIEMLSSDDIAAHGGEGDTFFAEGGNGTGPYKLVNWKRGVQIELERNTDWWGKFSDKPFDRIVDRFVEDGANRA
RGVEGGEFDMANFIPLDDAIRIAAQPGFKLIEGNNLWAWPAIYLNTQKAPTDNADFRKALVKAFDYQAMLDFSHGKATTP
SGPIPDWFPLSPEAQEPEIVTNLDEASAALEKSGIQNATMSCSIPAGFPEFRFAATILQASAAQLGVTVEVDERPTVEAL
KAIKNNETNCFAIGNANLSPADATKFFAAHYSRNGHYNAAKLDLPELEKIIADMPTVTQQSERAAQLKRAFELIVDSNAI
IWTARPKTLVIQPDRITGYRVDPAEYINIRFWEIGQAK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=530, Percent_Identity=26.6037735849057, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787052, Length=325, Percent_Identity=31.6923076923077, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1789966, Length=537, Percent_Identity=23.6499068901304, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787551, Length=423, Percent_Identity=24.3498817966903, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87082063, Length=273, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57023; Mature: 57023

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLGTFVRPASRRAIISSVLLAIAFLPVTAVAQDSSVFVYADAGEPTTLDPARTNTNYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCCEE
FTVTRSVYDRLINYDLDDPSSLQPGLAVEWTQDGNAWIVKLREGVKFHDGTSFDAEDVKA
EEEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEECCCCCCCHHHHHH
TLDRLLKLKLGQSYLVSEITGVTVIDPATVRIETAQPNVFLPANLSKIEMLSSDDIAAHG
HHHHHHHHHCCCHHHHHHHCCEEEECCCEEEEEECCCCEEECCCCCEEEEECCCCCEECC
GEGDTFFAEGGNGTGPYKLVNWKRGVQIELERNTDWWGKFSDKPFDRIVDRFVEDGANRA
CCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHH
RGVEGGEFDMANFIPLDDAIRIAAQPGFKLIEGNNLWAWPAIYLNTQKAPTDNADFRKAL
CCCCCCCCCCCEECCCCHHEEEECCCCEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHH
VKAFDYQAMLDFSHGKATTPSGPIPDWFPLSPEAQEPEIVTNLDEASAALEKSGIQNATM
HHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCEE
SCSIPAGFPEFRFAATILQASAAQLGVTVEVDERPTVEALKAIKNNETNCFAIGNANLSP
EEECCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCC
ADATKFFAAHYSRNGHYNAAKLDLPELEKIIADMPTVTQQSERAAQLKRAFELIVDSNAI
CHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCEE
IWTARPKTLVIQPDRITGYRVDPAEYINIRFWEIGQAK
EEEECCCEEEEECCCCCCEECCHHHEEEEEEEECCCCC
>Mature Secondary Structure
MLHLGTFVRPASRRAIISSVLLAIAFLPVTAVAQDSSVFVYADAGEPTTLDPARTNTNYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCCEE
FTVTRSVYDRLINYDLDDPSSLQPGLAVEWTQDGNAWIVKLREGVKFHDGTSFDAEDVKA
EEEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEECCCCCCCHHHHHH
TLDRLLKLKLGQSYLVSEITGVTVIDPATVRIETAQPNVFLPANLSKIEMLSSDDIAAHG
HHHHHHHHHCCCHHHHHHHCCEEEECCCEEEEEECCCCEEECCCCCEEEEECCCCCEECC
GEGDTFFAEGGNGTGPYKLVNWKRGVQIELERNTDWWGKFSDKPFDRIVDRFVEDGANRA
CCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHH
RGVEGGEFDMANFIPLDDAIRIAAQPGFKLIEGNNLWAWPAIYLNTQKAPTDNADFRKAL
CCCCCCCCCCCEECCCCHHEEEECCCCEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHH
VKAFDYQAMLDFSHGKATTPSGPIPDWFPLSPEAQEPEIVTNLDEASAALEKSGIQNATM
HHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCEE
SCSIPAGFPEFRFAATILQASAAQLGVTVEVDERPTVEALKAIKNNETNCFAIGNANLSP
EEECCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCC
ADATKFFAAHYSRNGHYNAAKLDLPELEKIIADMPTVTQQSERAAQLKRAFELIVDSNAI
CHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCEE
IWTARPKTLVIQPDRITGYRVDPAEYINIRFWEIGQAK
EEEECCCEEEEECCCCCCEECCHHHEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]