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The map label for this gene is ddpB [H]

Identifier: 225686840

GI number: 225686840

Start: 1051828

End: 1052838

Strand: Reverse

Name: ddpB [H]

Synonym: BMEA_B1079

Alternate gene names: 225686840

Gene position: 1052838-1051828 (Counterclockwise)

Preceding gene: 225686841

Following gene: 225686839

Centisome position: 88.81

GC content: 55.79

Gene sequence:

>1011_bases
ATGGTAGCCTTTCTTGCAAAACGTCTGGGTTGGGGGCTGGCGGTTCTGCTCAGCGTGGGAGTTCTGACCTTCGCGCTGGC
CCGCCTGGTGCCGGCAGACCCGGCAAGCTTTCTTGCCGGACAGAATGCCTCTACCGAAACGGTGGAACGCATTCGGAGCG
AGCTTGGGCTGGATCGCCCGGCTCTTGAACAATTCGCAAGTTATTTCACGGGCATTCTTCGTGGAGATCTGGGCCAATCC
ATTCGCACGGGTCGCCCGGTAGCGGAAGACCTCGCGCAATTCCTGCCAGCTACGCTCGAACTGATGATCGCAGGTTTTTT
CCTCTATATGCTTATCAGCTTCGGCCTGGCTCTTCTTGCCCTGCGCAAGCTGGATGGCATGCTGGACAAATCCGTGCGGC
TCGTAACGATGCTCGGCACCGGCATTCCTGTTTTCTGGCTGGGAATGGGATTGCAATTCATCTTTTTCTACAAGCTGGGT
TGGCTTCCGCTCAGTTCTCGCTTTCCGGTAAGAGAAATTGCGCCAGCGGGACCGACAGGCTTTCTTCTGATCGACACTTT
GGTCGCCGGGAATTTGCGCGGTTTCGGATTGGCTTTGCAGCACCTCTGCTTGCCCGCGCTCACCATCGTCATGAACCTTC
TGGCCGTTGGCACCCGGCTTACGCGTAGCACGCTGCTGGACGAAAGAGAACAGCCCTATGTCCGCACTGCTTTGGGCAAA
GGGCTGACCGGGCGGAGCATATTGTTGAAACACATGCTCCGAAATGCTGCCAATCCGATTCTGGTCACAACCTCGATGCA
GTTCGGCTACCTGATCAGCTGGATATTGATGGTCGAAGTAATCTTCGAATGGCCGGGTATCGGCCTCTATGCCTATAAAT
CATTCCAGCTCTTCGACTACGCTCCGGTTATCGCGCTGGCACTGGTTTCGACTGCCGGTTTTGTCATCATCAATCTCGCC
GTCGATCTCGTTCAACCGCTCATCGACCCTCGCATACGGAAATCGACATGA

Upstream 100 bases:

>100_bases
GCTATCGAGTTGACCCGGCCGAGTATATCAACATTCGTTTCTGGGAAATCGGACAGGCCAAGTAACCCTTCCGCGACCAA
CCAATGAATTCGGGGGCCCA

Downstream 100 bases:

>100_bases
CAGCCATCTCGCTTATCAAGCCTTGGCTGCCAAGCCATTTTCGTGTCCTCCCAGCCCTCGCCATTGTGTTCGTGATCGTC
CTCGCCATATGCATGACGTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MVAFLAKRLGWGLAVLLSVGVLTFALARLVPADPASFLAGQNASTETVERIRSELGLDRPALEQFASYFTGILRGDLGQS
IRTGRPVAEDLAQFLPATLELMIAGFFLYMLISFGLALLALRKLDGMLDKSVRLVTMLGTGIPVFWLGMGLQFIFFYKLG
WLPLSSRFPVREIAPAGPTGFLLIDTLVAGNLRGFGLALQHLCLPALTIVMNLLAVGTRLTRSTLLDEREQPYVRTALGK
GLTGRSILLKHMLRNAANPILVTTSMQFGYLISWILMVEVIFEWPGIGLYAYKSFQLFDYAPVIALALVSTAGFVIINLA
VDLVQPLIDPRIRKST

Sequences:

>Translated_336_residues
MVAFLAKRLGWGLAVLLSVGVLTFALARLVPADPASFLAGQNASTETVERIRSELGLDRPALEQFASYFTGILRGDLGQS
IRTGRPVAEDLAQFLPATLELMIAGFFLYMLISFGLALLALRKLDGMLDKSVRLVTMLGTGIPVFWLGMGLQFIFFYKLG
WLPLSSRFPVREIAPAGPTGFLLIDTLVAGNLRGFGLALQHLCLPALTIVMNLLAVGTRLTRSTLLDEREQPYVRTALGK
GLTGRSILLKHMLRNAANPILVTTSMQFGYLISWILMVEVIFEWPGIGLYAYKSFQLFDYAPVIALALVSTAGFVIINLA
VDLVQPLIDPRIRKST
>Mature_336_residues
MVAFLAKRLGWGLAVLLSVGVLTFALARLVPADPASFLAGQNASTETVERIRSELGLDRPALEQFASYFTGILRGDLGQS
IRTGRPVAEDLAQFLPATLELMIAGFFLYMLISFGLALLALRKLDGMLDKSVRLVTMLGTGIPVFWLGMGLQFIFFYKLG
WLPLSSRFPVREIAPAGPTGFLLIDTLVAGNLRGFGLALQHLCLPALTIVMNLLAVGTRLTRSTLLDEREQPYVRTALGK
GLTGRSILLKHMLRNAANPILVTTSMQFGYLISWILMVEVIFEWPGIGLYAYKSFQLFDYAPVIALALVSTAGFVIINLA
VDLVQPLIDPRIRKST

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=40.7294832826748, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=33.4319526627219, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=32.4324324324324, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789888, Length=338, Percent_Identity=33.4319526627219, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=30.5147058823529, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=27.2455089820359, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788504, Length=299, Percent_Identity=26.0869565217391, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36804; Mature: 36804

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAFLAKRLGWGLAVLLSVGVLTFALARLVPADPASFLAGQNASTETVERIRSELGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCH
ALEQFASYFTGILRGDLGQSIRTGRPVAEDLAQFLPATLELMIAGFFLYMLISFGLALLA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLDGMLDKSVRLVTMLGTGIPVFWLGMGLQFIFFYKLGWLPLSSRFPVREIAPAGPTG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCH
FLLIDTLVAGNLRGFGLALQHLCLPALTIVMNLLAVGTRLTRSTLLDEREQPYVRTALGK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
GLTGRSILLKHMLRNAANPILVTTSMQFGYLISWILMVEVIFEWPGIGLYAYKSFQLFDY
CCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
APVIALALVSTAGFVIINLAVDLVQPLIDPRIRKST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVAFLAKRLGWGLAVLLSVGVLTFALARLVPADPASFLAGQNASTETVERIRSELGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCH
ALEQFASYFTGILRGDLGQSIRTGRPVAEDLAQFLPATLELMIAGFFLYMLISFGLALLA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLDGMLDKSVRLVTMLGTGIPVFWLGMGLQFIFFYKLGWLPLSSRFPVREIAPAGPTG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCH
FLLIDTLVAGNLRGFGLALQHLCLPALTIVMNLLAVGTRLTRSTLLDEREQPYVRTALGK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
GLTGRSILLKHMLRNAANPILVTTSMQFGYLISWILMVEVIFEWPGIGLYAYKSFQLFDY
CCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
APVIALALVSTAGFVIINLAVDLVQPLIDPRIRKST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]