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The map label for this gene is pcaQ [H]

Identifier: 225686422

GI number: 225686422

Start: 602980

End: 603888

Strand: Reverse

Name: pcaQ [H]

Synonym: BMEA_B0615

Alternate gene names: 225686422

Gene position: 603888-602980 (Counterclockwise)

Preceding gene: 225686431

Following gene: 225686420

Centisome position: 50.94

GC content: 58.09

Gene sequence:

>909_bases
GTGATCGGAAACCGGATCAAGTTTCGTCATCTGCATACTTTCGTTGAAGTGGCTCGCCAGAAAAGCGTGGTGAAAGCCTC
TGAAATTCTAAACATCAGCCAGCCCGCCGTTACCAAGACAATGCGGGAGCTGGAAGAGATTTTGGGCGTGCCTGTGCTGG
AGCGCGACGGGCGCGGCATTCGCATTACGCGTTATGGCGAAGTCTTTCTGCGCCATGCCGGGACGGCGCTGACGGCCTTG
CGGCAGGGGCTCGATTCCGTATCGCAGGAACTGGACGGTTCCGGTCCGCCGATCCGCATCGGCGCGCTCCCGACCGTTTC
CACACGCATCATGCCGAAAGCGATCAGCCTGTTTCTGGCGGAAAAGACTGGAAGCAAGGTGAAAATCGTAACCGGCGAAA
ATGCCGTTCTGCTGGAACAGCCGCGCGTTGGCGATCTCGATCTGGTGGTCGGCAGACTGGCCGCGCCGGAAAAGATGACG
GGTTTTTCCTTCGAGCATCTCTATTCGGAGCGGGTGCGGTTTCTGGTGCGGGCAGGGCACCCCCTTTTGGATGACGATAC
CATATTCGACCATCTGGCCAATTATCCGGTGCTCATGCCCACCCGTAATTCGATCATTCGCCCGTTTGTGGAGCGCCTGC
TGATTACCAATGGTGTCGGCTCCCTGCCAACGCAGATTGAAACCGTGTCTGATGCTTTCGGGCGGGCCTTTGTGCGCGAT
AGCGATGCAGTGTGGATTATTTCCGAAGGGGTGGCGGCTCACGATGTGGCTGAAGGAAAGCTGGTCGCCCTGCCTATCGA
TACGAGCGAAACGACAGGCCCGGTCGGGCTGACGATGCGCACCGATATGGTGCAGACTGCACCTTTGCAGATCCTGGTGC
AGACTATTCGCGAAGCGGCGGATCATTAG

Upstream 100 bases:

>100_bases
ATTGCACGATTTTCTCCTCCTACGAGACAGTGTTGCGCTTTCGTCTGGTTAAGTAAAATGATATTCAGGACCGAAATCAT
AACTCACAGGTTATAGAAAA

Downstream 100 bases:

>100_bases
GCTTCTTCTATTTGAAGCAGAATCTTGATCGTCCCCGTTTCACTCCGGACGAATTTGCAACTGTAGCGCTAATCCCCATT
CTCCCATTCAGGTGAGTTGA

Product: pca operon transcription factor PcaQ

Products: NA

Alternate protein names: Pca operon transcriptional activator [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MIGNRIKFRHLHTFVEVARQKSVVKASEILNISQPAVTKTMRELEEILGVPVLERDGRGIRITRYGEVFLRHAGTALTAL
RQGLDSVSQELDGSGPPIRIGALPTVSTRIMPKAISLFLAEKTGSKVKIVTGENAVLLEQPRVGDLDLVVGRLAAPEKMT
GFSFEHLYSERVRFLVRAGHPLLDDDTIFDHLANYPVLMPTRNSIIRPFVERLLITNGVGSLPTQIETVSDAFGRAFVRD
SDAVWIISEGVAAHDVAEGKLVALPIDTSETTGPVGLTMRTDMVQTAPLQILVQTIREAADH

Sequences:

>Translated_302_residues
MIGNRIKFRHLHTFVEVARQKSVVKASEILNISQPAVTKTMRELEEILGVPVLERDGRGIRITRYGEVFLRHAGTALTAL
RQGLDSVSQELDGSGPPIRIGALPTVSTRIMPKAISLFLAEKTGSKVKIVTGENAVLLEQPRVGDLDLVVGRLAAPEKMT
GFSFEHLYSERVRFLVRAGHPLLDDDTIFDHLANYPVLMPTRNSIIRPFVERLLITNGVGSLPTQIETVSDAFGRAFVRD
SDAVWIISEGVAAHDVAEGKLVALPIDTSETTGPVGLTMRTDMVQTAPLQILVQTIREAADH
>Mature_302_residues
MIGNRIKFRHLHTFVEVARQKSVVKASEILNISQPAVTKTMRELEEILGVPVLERDGRGIRITRYGEVFLRHAGTALTAL
RQGLDSVSQELDGSGPPIRIGALPTVSTRIMPKAISLFLAEKTGSKVKIVTGENAVLLEQPRVGDLDLVVGRLAAPEKMT
GFSFEHLYSERVRFLVRAGHPLLDDDTIFDHLANYPVLMPTRNSIIRPFVERLLITNGVGSLPTQIETVSDAFGRAFVRD
SDAVWIISEGVAAHDVAEGKLVALPIDTSETTGPVGLTMRTDMVQTAPLQILVQTIREAADH

Specific function: Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=299, Percent_Identity=32.4414715719064, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=30.1003344481605, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1788887, Length=185, Percent_Identity=28.6486486486486, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=178, Percent_Identity=30.3370786516854, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786202, Length=150, Percent_Identity=27.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=197, Percent_Identity=24.3654822335025, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788481, Length=212, Percent_Identity=25, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR012787
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33083; Mature: 33083

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGNRIKFRHLHTFVEVARQKSVVKASEILNISQPAVTKTMRELEEILGVPVLERDGRGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCEE
RITRYGEVFLRHAGTALTALRQGLDSVSQELDGSGPPIRIGALPTVSTRIMPKAISLFLA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
EKTGSKVKIVTGENAVLLEQPRVGDLDLVVGRLAAPEKMTGFSFEHLYSERVRFLVRAGH
HCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
PLLDDDTIFDHLANYPVLMPTRNSIIRPFVERLLITNGVGSLPTQIETVSDAFGRAFVRD
CCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEC
SDAVWIISEGVAAHDVAEGKLVALPIDTSETTGPVGLTMRTDMVQTAPLQILVQTIREAA
CCEEEEEECCCCHHHCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
DH
CC
>Mature Secondary Structure
MIGNRIKFRHLHTFVEVARQKSVVKASEILNISQPAVTKTMRELEEILGVPVLERDGRGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCEE
RITRYGEVFLRHAGTALTALRQGLDSVSQELDGSGPPIRIGALPTVSTRIMPKAISLFLA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
EKTGSKVKIVTGENAVLLEQPRVGDLDLVVGRLAAPEKMTGFSFEHLYSERVRFLVRAGH
HCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
PLLDDDTIFDHLANYPVLMPTRNSIIRPFVERLLITNGVGSLPTQIETVSDAFGRAFVRD
CCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEC
SDAVWIISEGVAAHDVAEGKLVALPIDTSETTGPVGLTMRTDMVQTAPLQILVQTIREAA
CCEEEEEECCCCHHHCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
DH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]