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The map label for this gene is cydB [C]

Identifier: 225686306

GI number: 225686306

Start: 472472

End: 473626

Strand: Direct

Name: cydB [C]

Synonym: BMEA_B0485

Alternate gene names: 225686306

Gene position: 472472-473626 (Clockwise)

Preceding gene: 225686305

Following gene: 225686307

Centisome position: 39.85

GC content: 58.79

Gene sequence:

>1155_bases
ATGATACTCAGCGATTTGTTGGACTATCAAACCCTGCGGATCATCTGGTGGGTGCTGCTCGGCGTGCTGCTGATCGGCTT
TGCCGCCATGGATGGTTTCGACCTCGGCGTCGGCACGCTTCTGCCTTTCGTTGCCAGAACCGATGTGGAGCGTCGCGTCG
TCATCAATACAATCGGCCCCGTCTGGGAAGGCAATCAGGTCTGGTTGATCCTTGGCGGCGGTGCGATCTTCGCCGCCTGG
CCGCCGCTTTATGCGGTGTCCTTCTCCGGGTTCTATCTGGCGATGTTCGTCATCCTGTTCGCGCTCATCCTGCGCCCGGT
CGGCTTCAAGTTCCGCTCCAAGCGTGATGGAGAAACCTGGCGCAACAGTTGGGACTGGGCGCTGTTCATCGGCGGCTTCG
TGCCGGCGCTGATCTTCGGCGTGGCGGTTGGAAATGTGCTTCAGGGGGTTCCCTTCCGGCTCAACGGCGATCTCCAGATC
TTCTACGAAGGCTCATTCTTCGGCCTGCTCAATCCGTTTGCGCTTCTGTGCGGCATCCTGTCCGTCACCATGCTCACCAT
GCATGGCGCGGCATGGCTCGTTTTGAAGACAGATGGCGTGATACAGGCGCGGGCGCGGGCCTATGGCAGCGTTGCGGCGC
TGTTGACCGTCATTCTCTACATCGTCGCCGGTGCCATAAGCTGGCTTTGGGTGTCGGGGTATCGCATAACCAGTGCGGTG
GTGATGGACGGGCCTTCCAACCCGCTGCAAAAGACCGTGGAACTGGATCACGGCGCCTGGTTTGCGAACTATGCGAATTA
TCCGATCCTGCTGATCGCGCCTGCGCTTGGCATTCTCGGTGCGCTCGCGGTTCTCGCAACGCTACGCGGCGGTCGTGAAC
TTGCTCCGCTCCTCTTCGGAAAACTCTCGATCTTCGGCATCATCTCGTCTGTCGGCGTGTCGATGTTTCCGTTCATCCTG
CCGTCTTCGATCGATCCGCAATCGAGCCTGACGGTCTGGGATTCATCGTCCAGCCATCAGACGCTGTTCATCATGCTGGT
GGTAACGGTCGTCTTCATTCCGATCATCGTCGCCTATACCGCATGGGTCTATAAGGTCCTTTGGGGCAAGGTGGACAAGA
GCATGATCGAGGATGAGAGCAACCACGCTTACTGA

Upstream 100 bases:

>100_bases
TGGGCCTGATGCTGCGCGCCATCAAGGCCGGGCCTGAACCCGACAGCAAACCGGAAGCCATGCTAGCCCCGGCCAGCATT
GCACCTGCGGAGTAAGAACC

Downstream 100 bases:

>100_bases
TTGGAAAGGAAGCAAGATGTGGTATTTTTCCTGGCTTTTGGGCCTGCCGCTTGCAGCCGCGTTCGCTGTGCTGAATGCGA
TGTGGTATGAGCTGATGGAC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MILSDLLDYQTLRIIWWVLLGVLLIGFAAMDGFDLGVGTLLPFVARTDVERRVVINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFVILFALILRPVGFKFRSKRDGETWRNSWDWALFIGGFVPALIFGVAVGNVLQGVPFRLNGDLQI
FYEGSFFGLLNPFALLCGILSVTMLTMHGAAWLVLKTDGVIQARARAYGSVAALLTVILYIVAGAISWLWVSGYRITSAV
VMDGPSNPLQKTVELDHGAWFANYANYPILLIAPALGILGALAVLATLRGGRELAPLLFGKLSIFGIISSVGVSMFPFIL
PSSIDPQSSLTVWDSSSSHQTLFIMLVVTVVFIPIIVAYTAWVYKVLWGKVDKSMIEDESNHAY

Sequences:

>Translated_384_residues
MILSDLLDYQTLRIIWWVLLGVLLIGFAAMDGFDLGVGTLLPFVARTDVERRVVINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFVILFALILRPVGFKFRSKRDGETWRNSWDWALFIGGFVPALIFGVAVGNVLQGVPFRLNGDLQI
FYEGSFFGLLNPFALLCGILSVTMLTMHGAAWLVLKTDGVIQARARAYGSVAALLTVILYIVAGAISWLWVSGYRITSAV
VMDGPSNPLQKTVELDHGAWFANYANYPILLIAPALGILGALAVLATLRGGRELAPLLFGKLSIFGIISSVGVSMFPFIL
PSSIDPQSSLTVWDSSSSHQTLFIMLVVTVVFIPIIVAYTAWVYKVLWGKVDKSMIEDESNHAY
>Mature_384_residues
MILSDLLDYQTLRIIWWVLLGVLLIGFAAMDGFDLGVGTLLPFVARTDVERRVVINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFVILFALILRPVGFKFRSKRDGETWRNSWDWALFIGGFVPALIFGVAVGNVLQGVPFRLNGDLQI
FYEGSFFGLLNPFALLCGILSVTMLTMHGAAWLVLKTDGVIQARARAYGSVAALLTVILYIVAGAISWLWVSGYRITSAV
VMDGPSNPLQKTVELDHGAWFANYANYPILLIAPALGILGALAVLATLRGGRELAPLLFGKLSIFGIISSVGVSMFPFIL
PSSIDPQSSLTVWDSSSSHQTLFIMLVVTVVFIPIIVAYTAWVYKVLWGKVDKSMIEDESNHAY

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=49.0765171503958, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=47.7572559366755, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42035; Mature: 42035

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSDLLDYQTLRIIWWVLLGVLLIGFAAMDGFDLGVGTLLPFVARTDVERRVVINTIGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
VWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFVILFALILRPVGFKFRSKRDGETW
CCCCCEEEEEEECCEEEECCCCHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
RNSWDWALFIGGFVPALIFGVAVGNVLQGVPFRLNGDLQIFYEGSFFGLLNPFALLCGIL
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
SVTMLTMHGAAWLVLKTDGVIQARARAYGSVAALLTVILYIVAGAISWLWVSGYRITSAV
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
VMDGPSNPLQKTVELDHGAWFANYANYPILLIAPALGILGALAVLATLRGGRELAPLLFG
EECCCCCHHHHHHCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KLSIFGIISSVGVSMFPFILPSSIDPQSSLTVWDSSSSHQTLFIMLVVTVVFIPIIVAYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AWVYKVLWGKVDKSMIEDESNHAY
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MILSDLLDYQTLRIIWWVLLGVLLIGFAAMDGFDLGVGTLLPFVARTDVERRVVINTIGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
VWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFVILFALILRPVGFKFRSKRDGETW
CCCCCEEEEEEECCEEEECCCCHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
RNSWDWALFIGGFVPALIFGVAVGNVLQGVPFRLNGDLQIFYEGSFFGLLNPFALLCGIL
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
SVTMLTMHGAAWLVLKTDGVIQARARAYGSVAALLTVILYIVAGAISWLWVSGYRITSAV
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
VMDGPSNPLQKTVELDHGAWFANYANYPILLIAPALGILGALAVLATLRGGRELAPLLFG
EECCCCCHHHHHHCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KLSIFGIISSVGVSMFPFILPSSIDPQSSLTVWDSSSSHQTLFIMLVVTVVFIPIIVAYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AWVYKVLWGKVDKSMIEDESNHAY
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]