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The map label for this gene is cydA [H]

Identifier: 225686305

GI number: 225686305

Start: 470889

End: 472466

Strand: Direct

Name: cydA [H]

Synonym: BMEA_B0484

Alternate gene names: 225686305

Gene position: 470889-472466 (Clockwise)

Preceding gene: 225686304

Following gene: 225686306

Centisome position: 39.72

GC content: 55.83

Gene sequence:

>1578_bases
ATGGAACTCGATATTGTCTCCCTGTCGCGATTGCAATTTGCAATCACGGCACTTTATCACTTCCTCTTCGTGCCTCTGAC
TTTGGGTCTTTCCGTGTTGCTGGCCATCATGGAAACCGTTTACGTCATGACTGGCCGCCTTATCTGGCGGCAGATGACGA
AATTCTGGGGTACGCTGTTTGGTATTAATTTTGTTATGGGTGTCGCCACAGGCATCGTGATGGAATTTCAGTTTGGTATG
AACTGGAGCTATTACAGCCATTATGTCGGCGATATTTTCGGCGCACCGCTTGCGATTGAAGGCATGATGGCCTTCTTCCT
CGAAGCCACATTCGTCGGTTTGTTCTTTTTTGGCTGGGACCGTCTTTCCAAGGTCGGCCACCTGGTTGCAACCTATGCGG
TCGCCGCAGGTTCCAATTTTTCCGCTCTCTGGATCCTGATTGCAAATGGCTGGATGCAAAATCCGGTTGGCTCTGCCTTC
AATCCCGAAACCATGCGCATGGAGATCACCGATTTTTTCGCGGTGCTGACGAACCCTGTCGCACAGGCAAAATTCGTCCA
CACGGTTTCGGCAGGTTATGCCACGGCATCAATCTTCGTGCTGGGTATCTCGGCCTGGTATCTCCTGCGGGGCCGCTCGG
TCGAACTTGCCAAGCGCTCGCTTACGGTTGCGGCTTCCTTCGGGCTTGCGGCATCGCTTTCGGTTGTCGTCCTTGGCGAT
GAAAGCGGCTATCTCACCAACGAGCACCAGAAGATGAAGATCGCGGCCATTGAAGCCATGTGGGAAACCGAGCCGGCTCC
GGCATCGTTCACCCTGTTTGGCTTCCCCGATCAGGAAGCGCGCGAAACGCATTTCGCCGTGCGTATTCCCTGGGTCATGG
GCCTCATTGGAACACGCTCGCTGACGACGCCCATCGAAGGCATCGACCAGCTTGTGCAGAATGCGGAAAAACATATCCGC
AACGGCATTGTTGCCTATGATGCCCTGCAAAAAATTCGCGCGGCGGGTGGCACCAATGCCGTTTCGCAGGAAGTGAGGGA
CGCTTTTGCCGATAACAGCCAGTGGATGGGCTATGCGCTTCTCCTGAAACGTTATGTGGACGACCCACGCAATGCGACGG
ACGAACAGATCGTCAAGGCAGCAAACGACACGGTTCCCGGCGTTCTGCCGCTCTTCTGGGCGTTCCGCATCATGGTCGGC
ATCGGCTTCTTCCTGATCCTGCTGACGGGAACGTTCTTCGTTCTTTCTGCCCGCCGGGCATTGGACCGTTATCCGTTCCT
TCTGAAAGTGGCGGTATTTGCCATACCGTTGCCCTGGATCGCGGCTGAAATGGGCTGGGTCGTCGCCGAATTCGGGCGCC
AACCCTGGAGCATCGAAGGCATATTGCCAACGGCGGTTGCCGTATCAAACCTCGGCGCTTCGACGGTTCTGCTCACCATC
GTCGGTTTCGTGGTCATCTACACGGTCCTTTTCATCATCGAAATGGGCCTGATGCTGCGCGCCATCAAGGCCGGGCCTGA
ACCCGACAGCAAACCGGAAGCCATGCTAGCCCCGGCCAGCATTGCACCTGCGGAGTAA

Upstream 100 bases:

>100_bases
TGGAATGGATGGAAATTTGAAAACCATCTGTTTCAAAAAAGGGCTTTGCACAAGCACAGCTCACAACATCAGGAGGGCCG
GGTTGACCGGCTTTAGTGAG

Downstream 100 bases:

>100_bases
GAACCATGATACTCAGCGATTTGTTGGACTATCAAACCCTGCGGATCATCTGGTGGGTGCTGCTCGGCGTGCTGCTGATC
GGCTTTGCCGCCATGGATGG

Product: cytochrome d ubiquinol oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MELDIVSLSRLQFAITALYHFLFVPLTLGLSVLLAIMETVYVMTGRLIWRQMTKFWGTLFGINFVMGVATGIVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDRLSKVGHLVATYAVAAGSNFSALWILIANGWMQNPVGSAF
NPETMRMEITDFFAVLTNPVAQAKFVHTVSAGYATASIFVLGISAWYLLRGRSVELAKRSLTVAASFGLAASLSVVVLGD
ESGYLTNEHQKMKIAAIEAMWETEPAPASFTLFGFPDQEARETHFAVRIPWVMGLIGTRSLTTPIEGIDQLVQNAEKHIR
NGIVAYDALQKIRAAGGTNAVSQEVRDAFADNSQWMGYALLLKRYVDDPRNATDEQIVKAANDTVPGVLPLFWAFRIMVG
IGFFLILLTGTFFVLSARRALDRYPFLLKVAVFAIPLPWIAAEMGWVVAEFGRQPWSIEGILPTAVAVSNLGASTVLLTI
VGFVVIYTVLFIIEMGLMLRAIKAGPEPDSKPEAMLAPASIAPAE

Sequences:

>Translated_525_residues
MELDIVSLSRLQFAITALYHFLFVPLTLGLSVLLAIMETVYVMTGRLIWRQMTKFWGTLFGINFVMGVATGIVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDRLSKVGHLVATYAVAAGSNFSALWILIANGWMQNPVGSAF
NPETMRMEITDFFAVLTNPVAQAKFVHTVSAGYATASIFVLGISAWYLLRGRSVELAKRSLTVAASFGLAASLSVVVLGD
ESGYLTNEHQKMKIAAIEAMWETEPAPASFTLFGFPDQEARETHFAVRIPWVMGLIGTRSLTTPIEGIDQLVQNAEKHIR
NGIVAYDALQKIRAAGGTNAVSQEVRDAFADNSQWMGYALLLKRYVDDPRNATDEQIVKAANDTVPGVLPLFWAFRIMVG
IGFFLILLTGTFFVLSARRALDRYPFLLKVAVFAIPLPWIAAEMGWVVAEFGRQPWSIEGILPTAVAVSNLGASTVLLTI
VGFVVIYTVLFIIEMGLMLRAIKAGPEPDSKPEAMLAPASIAPAE
>Mature_525_residues
MELDIVSLSRLQFAITALYHFLFVPLTLGLSVLLAIMETVYVMTGRLIWRQMTKFWGTLFGINFVMGVATGIVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDRLSKVGHLVATYAVAAGSNFSALWILIANGWMQNPVGSAF
NPETMRMEITDFFAVLTNPVAQAKFVHTVSAGYATASIFVLGISAWYLLRGRSVELAKRSLTVAASFGLAASLSVVVLGD
ESGYLTNEHQKMKIAAIEAMWETEPAPASFTLFGFPDQEARETHFAVRIPWVMGLIGTRSLTTPIEGIDQLVQNAEKHIR
NGIVAYDALQKIRAAGGTNAVSQEVRDAFADNSQWMGYALLLKRYVDDPRNATDEQIVKAANDTVPGVLPLFWAFRIMVG
IGFFLILLTGTFFVLSARRALDRYPFLLKVAVFAIPLPWIAAEMGWVVAEFGRQPWSIEGILPTAVAVSNLGASTVLLTI
VGFVVIYTVLFIIEMGLMLRAIKAGPEPDSKPEAMLAPASIAPAE

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=504, Percent_Identity=59.5238095238095, Blast_Score=623, Evalue=1e-180,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=50.5952380952381, Blast_Score=512, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57675; Mature: 57675

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELDIVSLSRLQFAITALYHFLFVPLTLGLSVLLAIMETVYVMTGRLIWRQMTKFWGTLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVMGVATGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLSKVGHLVATYAVAAGSNFSALWILIANGWMQNPVGSAFNPETMRMEITDFFAVLTNPV
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHCHH
AQAKFVHTVSAGYATASIFVLGISAWYLLRGRSVELAKRSLTVAASFGLAASLSVVVLGD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
ESGYLTNEHQKMKIAAIEAMWETEPAPASFTLFGFPDQEARETHFAVRIPWVMGLIGTRS
CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCEEEEEHHHHHHHHCCCC
LTTPIEGIDQLVQNAEKHIRNGIVAYDALQKIRAAGGTNAVSQEVRDAFADNSQWMGYAL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
LLKRYVDDPRNATDEQIVKAANDTVPGVLPLFWAFRIMVGIGFFLILLTGTFFVLSARRA
HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDRYPFLLKVAVFAIPLPWIAAEMGWVVAEFGRQPWSIEGILPTAVAVSNLGASTVLLTI
HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHCCHHHHHHHH
VGFVVIYTVLFIIEMGLMLRAIKAGPEPDSKPEAMLAPASIAPAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCC
>Mature Secondary Structure
MELDIVSLSRLQFAITALYHFLFVPLTLGLSVLLAIMETVYVMTGRLIWRQMTKFWGTLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVMGVATGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLSKVGHLVATYAVAAGSNFSALWILIANGWMQNPVGSAFNPETMRMEITDFFAVLTNPV
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHCHH
AQAKFVHTVSAGYATASIFVLGISAWYLLRGRSVELAKRSLTVAASFGLAASLSVVVLGD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
ESGYLTNEHQKMKIAAIEAMWETEPAPASFTLFGFPDQEARETHFAVRIPWVMGLIGTRS
CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCEEEEEHHHHHHHHCCCC
LTTPIEGIDQLVQNAEKHIRNGIVAYDALQKIRAAGGTNAVSQEVRDAFADNSQWMGYAL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
LLKRYVDDPRNATDEQIVKAANDTVPGVLPLFWAFRIMVGIGFFLILLTGTFFVLSARRA
HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDRYPFLLKVAVFAIPLPWIAAEMGWVVAEFGRQPWSIEGILPTAVAVSNLGASTVLLTI
HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHCCHHHHHHHH
VGFVVIYTVLFIIEMGLMLRAIKAGPEPDSKPEAMLAPASIAPAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]