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The map label for this gene is rbfA [H]

Identifier: 225853591

GI number: 225853591

Start: 2107329

End: 2107781

Strand: Direct

Name: rbfA [H]

Synonym: BMEA_A2226

Alternate gene names: 225853591

Gene position: 2107329-2107781 (Clockwise)

Preceding gene: 225853590

Following gene: 225853592

Centisome position: 99.14

GC content: 58.72

Gene sequence:

>453_bases
ATGGCACGTTCTCATGATACGAAAGGCTCCGGCGGTCTTTCCCAGCGCCAGCTTCGCGTGGGCGAACAGGTCCGCCACGC
TCTGGCGCAGGTACTTCAGCGCGGTGAAATCCGTGACGACCTGATCGAGCGCACCGTCATTTCCGTTTCGGAAGTGCGTA
TGTCGCCCGATCTCAAGATCGCGACCTGCTTCATCACGCCACTTGGCAGCGCCGATCCGCAGGCTGTCATCAAGGCGCTT
GCCTCCCATGCGAAATTCATTCGCGGCCGTGTGGCGCCGAGCCTTGCCCAAATGAAATATATGCCGGAATTCCGGTTCCG
GCCTGATACGAGCTTTGACAATTTCTCGAAGATCGATGCGCTTCTCCGCTTCCCGGAAGTGGCGCGCGATCTGTCGCATG
ACGATGATGAAGATGGCGGAGCGGATGAAGCCCCGCGCAATGGAGACGAATAA

Upstream 100 bases:

>100_bases
TCTTTTATCCGAAAGGCTTGTCGGCCTCTTCGGTTTTGTGCTGTGCGAACATGTACCGGCCAATCTGGGCGGGCATGTCG
AAACAAGAAGAGATAAGGCA

Downstream 100 bases:

>100_bases
AGCATGGCAAGACGGGGCAAGAAAAAAGGTCGCCCGATATCCGGCTGGGTCATTTTTGACAAGCCGAAGGGAATGGGATC
GACCGAGGCGGTCTCGAAGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MARSHDTKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKAL
ASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSHDDDEDGGADEAPRNGDE

Sequences:

>Translated_150_residues
MARSHDTKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKAL
ASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSHDDDEDGGADEAPRNGDE
>Mature_149_residues
ARSHDTKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKALA
SHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSHDDDEDGGADEAPRNGDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 16633; Mature: 16502

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSHDTKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEE
ATCFITPLGSADPQAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDA
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LLRFPEVARDLSHDDDEDGGADEAPRNGDE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARSHDTKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEE
ATCFITPLGSADPQAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDA
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LLRFPEVARDLSHDDDEDGGADEAPRNGDE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA