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The map label for this gene is yggS [C]

Identifier: 225853252

GI number: 225853252

Start: 1756803

End: 1757483

Strand: Direct

Name: yggS [C]

Synonym: BMEA_A1858

Alternate gene names: 225853252

Gene position: 1756803-1757483 (Clockwise)

Preceding gene: 225853249

Following gene: 225853255

Centisome position: 82.65

GC content: 61.09

Gene sequence:

>681_bases
ATGTCTGATGTCGTAGCCAATCTCAATGCCGTCAAGGCGGTTATCGCGCGGGCGGAAAAAGAAGCGCGGCGGGAGAACGG
CTCCGTCACGCTCGTCGCGGTGTCGAAAACCTTCGACGCACAAGCCATTCGCCCGGCCCTCGACGCCGGACAGCGTGTTT
TCGGCGAAAACCGTGTCCAGGAAGCACAAGGCAAATGGCCTGCCCTGCGCGAAGCCTGGGCCAGTATCGAACTTCATCTG
ATCGGCCCTCTGCAATCCAACAAGGCAGCGGACGCCGTTGCCCTTTTCGACGCCATTGAAACGGTGGACCGCGAGAAGAT
CGCAGCCGCCCTGGCCAGCGAGATCAGGAAACAGGGCAAGAGCCCGAAACTCTATGTGCAGGTCAATACCGGCCTGGAAC
CGCAGAAGGCCGGCATTCCACCGCAAGAAGCCGTTGCCTTCGTGGAGCGTTGCCGCAAGGAGCACGGCCTTGTCATAGAG
GGCCTCATGTGCATTCCGCCCGCTGGCGAAAATCCGGGCCCGCATTTTGCCCTTCTGGAAAAGCTTGCCCGCGAAGCCCA
TGTTGAAAAGCTCTCCATGGGCATGTCCGGCGACTATGAAACGGCGATTGGTTTCGGCGCGACATCGGTGCGCGTCGGGG
CGGCAATTTTCGGCGGGCGGGCCTATTCCGCCTCCGTATGA

Upstream 100 bases:

>100_bases
ATGATGCAATAAGGAGAGTCGATATTTAATGGCGACCTTCACCACGGTTTGGCGATAGCGTCAACCTTTTGCGGAAAAAA
GACCGGAAAGCGAGAGTTTC

Downstream 100 bases:

>100_bases
CGGCACTCTCCTTCAGGTCTGCCCAGGTTTGCCGTGCCGCAGGCGCTTTCTGATCGTCATGATCGCGCGGCTGTAGATCC
ACGCGACCGAGAGCGCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHL
IGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIE
GLMCIPPAGENPGPHFALLEKLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSASV

Sequences:

>Translated_226_residues
MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHL
IGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIE
GLMCIPPAGENPGPHFALLEKLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSASV
>Mature_225_residues
SDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLI
GPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEG
LMCIPPAGENPGPHFALLEKLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSASV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=214, Percent_Identity=40.6542056074766, Blast_Score=117, Evalue=7e-27,
Organism=Escherichia coli, GI1789321, Length=238, Percent_Identity=39.0756302521008, Blast_Score=134, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=213, Percent_Identity=41.3145539906103, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=240, Percent_Identity=34.5833333333333, Blast_Score=89, Evalue=4e-19,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=38.2075471698113, Blast_Score=110, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24081; Mature: 23950

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK
HHCCCCHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE
CCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHH
KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSASV
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK
HHCCCCHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE
CCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHH
KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSASV
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]