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The map label for this gene is ydfH [C]

Identifier: 225853240

GI number: 225853240

Start: 1742815

End: 1743510

Strand: Direct

Name: ydfH [C]

Synonym: BMEA_A1845

Alternate gene names: 225853240

Gene position: 1742815-1743510 (Clockwise)

Preceding gene: 225853239

Following gene: 225853249

Centisome position: 81.99

GC content: 63.22

Gene sequence:

>696_bases
ATGGAACAGGTTAAAGCGCACGAAACATCTGCGAACCGCCCCCGTGGCCTTGCGCTGGCGGGAGTTGATGGCTGGGCAAG
TGAAAGCCTGGCCGAACAGGCCTACCAGATTCTTGAACGGCTGATCGTCACGCTGGAGCTTGAACCCGGCACACTCGTCA
ACGAACGCACGCTGATCGATCTGACCGGCATGGGCCGCACTCCCCTGCGTGAGGCCATACAGCGCCTTGCATGGGAAGGG
CTGATGGAGGTGCGCGCCCGATCCGGCATCGCCATAGCGCCGATCGATCCGAAGGATTTCATCAAGGTTCTGGATGCGCG
CGAGGGCGTGGAACGGGTGCTGGCCCGCGACGCTGCGCGTTTCGGCAGCCCGCGCGATTACGAGAGGCTCGAAGCCGCAG
CCAAGGCCATGCGGCAGGCGGTTCCAACCGAGGACGTGTCCCTGTTTCTGGATGCGGACAAGGCATTTGATATCGTGCTG
GGTGCAGCCGCAAGCAATCCCTATGCGGCGCGCATCGTGGCCCCCTTGCAAAGCCATAGCCGCCGGTTCTGGTTCCGCCT
TCGCCCATCATCGGGCATCGCAGGCTCGGCCAATGCCCACGCGACCCTGATCGAAGCGATCATTTCACGCGACCCGGAAC
GCGCCAGTGATACGGCCAGCGAACTCATGGCCTATCTGCGCACACTCGCGCCATAG

Upstream 100 bases:

>100_bases
GCCTGCTTGTTTCGAGACTTCACCTTTCGTTTGATATATCAGTGATATATCTATACACTTGCATTATGTCAATCACGTTT
GTCACAAAGCAAGAAGCAGC

Downstream 100 bases:

>100_bases
AACATTTTCGGTACTGGCCAAATAAAAAACCGGAGCAAAGCCCCGGTTTCTTCATCGGTTCGCGCGCATGGCTCAATGGG
TCTTGCTCATCGAACTGGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; FCD Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; Regulatory Protein; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Regulatory Protein GntR; Transcriptional Regulator Protein GntR Family; Transcription Regulator Family Protein; GntR Family Transcription Regulator Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MEQVKAHETSANRPRGLALAGVDGWASESLAEQAYQILERLIVTLELEPGTLVNERTLIDLTGMGRTPLREAIQRLAWEG
LMEVRARSGIAIAPIDPKDFIKVLDAREGVERVLARDAARFGSPRDYERLEAAAKAMRQAVPTEDVSLFLDADKAFDIVL
GAAASNPYAARIVAPLQSHSRRFWFRLRPSSGIAGSANAHATLIEAIISRDPERASDTASELMAYLRTLAP

Sequences:

>Translated_231_residues
MEQVKAHETSANRPRGLALAGVDGWASESLAEQAYQILERLIVTLELEPGTLVNERTLIDLTGMGRTPLREAIQRLAWEG
LMEVRARSGIAIAPIDPKDFIKVLDAREGVERVLARDAARFGSPRDYERLEAAAKAMRQAVPTEDVSLFLDADKAFDIVL
GAAASNPYAARIVAPLQSHSRRFWFRLRPSSGIAGSANAHATLIEAIISRDPERASDTASELMAYLRTLAP
>Mature_231_residues
MEQVKAHETSANRPRGLALAGVDGWASESLAEQAYQILERLIVTLELEPGTLVNERTLIDLTGMGRTPLREAIQRLAWEG
LMEVRARSGIAIAPIDPKDFIKVLDAREGVERVLARDAARFGSPRDYERLEAAAKAMRQAVPTEDVSLFLDADKAFDIVL
GAAASNPYAARIVAPLQSHSRRFWFRLRPSSGIAGSANAHATLIEAIISRDPERASDTASELMAYLRTLAP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25272; Mature: 25272

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVKAHETSANRPRGLALAGVDGWASESLAEQAYQILERLIVTLELEPGTLVNERTLID
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCEEEE
LTGMGRTPLREAIQRLAWEGLMEVRARSGIAIAPIDPKDFIKVLDAREGVERVLARDAAR
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FGSPRDYERLEAAAKAMRQAVPTEDVSLFLDADKAFDIVLGAAASNPYAARIVAPLQSHS
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEHEEECCCCCCCHHHHHHHHHHCC
RRFWFRLRPSSGIAGSANAHATLIEAIISRDPERASDTASELMAYLRTLAP
CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQVKAHETSANRPRGLALAGVDGWASESLAEQAYQILERLIVTLELEPGTLVNERTLID
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCEEEE
LTGMGRTPLREAIQRLAWEGLMEVRARSGIAIAPIDPKDFIKVLDAREGVERVLARDAAR
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FGSPRDYERLEAAAKAMRQAVPTEDVSLFLDADKAFDIVLGAAASNPYAARIVAPLQSHS
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEHEEECCCCCCCHHHHHHHHHHCC
RRFWFRLRPSSGIAGSANAHATLIEAIISRDPERASDTASELMAYLRTLAP
CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA