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The map label for this gene is rpoE [H]

Identifier: 225853124

GI number: 225853124

Start: 1626661

End: 1627233

Strand: Direct

Name: rpoE [H]

Synonym: BMEA_A1715

Alternate gene names: 225853124

Gene position: 1626661-1627233 (Clockwise)

Preceding gene: 225853120

Following gene: 225853125

Centisome position: 76.52

GC content: 60.73

Gene sequence:

>573_bases
GTGGGCAGAACAACAGGTCCGTCGGTTGAGGGGACGCCGCCGTTCAAGCGTGAACTTCTGGCGTCGCTGCCGAGCTTGCG
CGCATTTGCGGTCTCGCTGATCGGTCAGCATGACCGGGCGGACGATCTCGTTCAGGATACGATCATGAAGGCATGGGCCA
AGCAGGAGTCCTTTGAAGTGGGGACCAATATGAAGGCTTGGCTCTTCACCATTCTGCGCAATGAATTCTACACCCAGATG
CGCAAGCGCGGCCGCGAGGTGCAGGATACGGACGGCATGTTCAGCGAACAGCTTGCCGTGCATCCCTCGCAATATGGCAC
GCTTGATCTTCAGGATTTTCGCGCTGCCCTCGACCAGCTTCCGGACGACCAGCGTGAGGCAATCATCCTCATCGGGGCTT
CGGGCTTTGCCTATGAGGAAGCGGCCGAGATTTGCGGCTGTGCCGTGGGCACGATCAAAAGCCGTGTCAGCCGCGCCCGC
GCCCGCCTTCAGGAAATTCTCCAGATCGAAGGCGAGGCGGATTATGGCCCCGACGCCGATTCCTCCCGTGCGACCCCCAG
AAGCTTCGCCTGA

Upstream 100 bases:

>100_bases
AAACTTAAGGCTTTGTACGCCTCTATACAGGACGAGACGATCCCGGATCGGTTTCTCGATCTACTGGAAAAACTCGACCA
AGCCGAACAGGAGAGTATGC

Downstream 100 bases:

>100_bases
CCAAAGCATCTGCCCGGCATTCTGCCGTCTCCCCGGTGGCTTCCACCTTCTGAAGCATAATCTTGATCGTCCGCGTATCA
TGCCCGCCTGGATCGAAATG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MGRTTGPSVEGTPPFKRELLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEVGTNMKAWLFTILRNEFYTQM
RKRGREVQDTDGMFSEQLAVHPSQYGTLDLQDFRAALDQLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRAR
ARLQEILQIEGEADYGPDADSSRATPRSFA

Sequences:

>Translated_190_residues
MGRTTGPSVEGTPPFKRELLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEVGTNMKAWLFTILRNEFYTQM
RKRGREVQDTDGMFSEQLAVHPSQYGTLDLQDFRAALDQLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRAR
ARLQEILQIEGEADYGPDADSSRATPRSFA
>Mature_189_residues
GRTTGPSVEGTPPFKRELLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEVGTNMKAWLFTILRNEFYTQMR
KRGREVQDTDGMFSEQLAVHPSQYGTLDLQDFRAALDQLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARA
RLQEILQIEGEADYGPDADSSRATPRSFA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21076; Mature: 20945

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTTGPSVEGTPPFKRELLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEV
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GTNMKAWLFTILRNEFYTQMRKRGREVQDTDGMFSEQLAVHPSQYGTLDLQDFRAALDQL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHC
PDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQEILQIEGEADYGPDAD
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SSRATPRSFA
CCCCCCCCCC
>Mature Secondary Structure 
GRTTGPSVEGTPPFKRELLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEV
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GTNMKAWLFTILRNEFYTQMRKRGREVQDTDGMFSEQLAVHPSQYGTLDLQDFRAALDQL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHC
PDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQEILQIEGEADYGPDAD
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SSRATPRSFA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]