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The map label for this gene is yjfH [C]

Identifier: 225853064

GI number: 225853064

Start: 1557607

End: 1558437

Strand: Direct

Name: yjfH [C]

Synonym: BMEA_A1643

Alternate gene names: 225853064

Gene position: 1557607-1558437 (Clockwise)

Preceding gene: 225853063

Following gene: 225853067

Centisome position: 73.27

GC content: 54.75

Gene sequence:

>831_bases
ATGCAGGATATAGATACCAGATCGCACGACTGCGTCTTTGTAATCGATGACGCGGACGACATTCGCCTCGCTCCATATCG
CGACATCCGCGAAAAGGATCTTGTGGGGCGTCAACAGCGTTTTATCGCTGAAGGTAAAGTGGTTTTGAACGTGCTTTTTT
CCTCTTCCGCACGTTTTGAAACGGAATCCCTGCTCGTACTGGAAAACCGGCTGGGAGGATTGACCGAACAGCTAAGGCAG
TTGCCGCCGGGCGTGCCTGTTTATTCAGTGCCGCAAGCAATCATGGATGCGGTCGCGGGCTTTCATGTTCATCGCGGCAT
TTTGGCCGTTGGCCGCCGAAAATCACAGCCTGACCTTCGGGATATGCTGGCCGCCCTGCCCCAAAAATCTTTGGTGGTGG
TTTTGTGCGGAATTTCCAACCACGATAATGTCGGCTCGATCTTCCGCAATGCTGCCGCTTTTGAGGCCGATTGCGTATTG
ATGGACGAGACCTGTTGCGATCCGCTTTATCGCAAGGCAATCCGCGTCTCGGTCGGCGCGGCGCTCAAGGTTCCTTATTT
TCACGGCGGCACGATTGACGACATCAACGCCGCTCTTGCAGAGGCCGGGTTCAATCTTCTGGCCCTCACCCCATCCGCAC
CGCGCAGTATCTATGAAGCCACCATTTGCGAACGGCAGGCTCTTCTTCTTGGCACCGAGGGTGAAGGATTGCCTTCCCGC
CTTCTGGAAAGGCTGGAAACTGCGCGAATTCCCATGTCGAAGACATTCGACAGCCTCAATGTCGCAACCGCATCCGGCAT
TGCCTTGTCTCGTTTCAGCAAGTTTTCCTAG

Upstream 100 bases:

>100_bases
CGACGCTCTCCGGCCTCTATATGAGTCCCACACCACGCCGGCGTGAAATGATGGCGGTGGCGCACCAATAAACCACATCC
CATGAGGCCGCAGCCGTGCG

Downstream 100 bases:

>100_bases
AGCATTTTCGAGCCAAAAGTGTGAAACGCCTACGCGGGGAAATCAGTCCACCGGGCTGATTTATGGTCCCGCTTCGATAC
GTGGGATAATGCGGCAAAAC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQDIDTRSHDCVFVIDDADDIRLAPYRDIREKDLVGRQQRFIAEGKVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQ
LPPGVPVYSVPQAIMDAVAGFHVHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVL
MDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSR
LLERLETARIPMSKTFDSLNVATASGIALSRFSKFS

Sequences:

>Translated_276_residues
MQDIDTRSHDCVFVIDDADDIRLAPYRDIREKDLVGRQQRFIAEGKVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQ
LPPGVPVYSVPQAIMDAVAGFHVHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVL
MDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSR
LLERLETARIPMSKTFDSLNVATASGIALSRFSKFS
>Mature_276_residues
MQDIDTRSHDCVFVIDDADDIRLAPYRDIREKDLVGRQQRFIAEGKVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQ
LPPGVPVYSVPQAIMDAVAGFHVHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVL
MDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSR
LLERLETARIPMSKTFDSLNVATASGIALSRFSKFS

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=190, Percent_Identity=30.5263157894737, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30142; Mature: 30142

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDIDTRSHDCVFVIDDADDIRLAPYRDIREKDLVGRQQRFIAEGKVVLNVLFSSSARFE
CCCCCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
TESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFHVHRGILAVGRRKSQPDLR
HHHEEEEHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGA
HHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHCCHHHHHHHHHHCCC
ALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSR
EEECCEECCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCHHH
LLERLETARIPMSKTFDSLNVATASGIALSRFSKFS
HHHHHHHHCCCHHHHHCCCCHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MQDIDTRSHDCVFVIDDADDIRLAPYRDIREKDLVGRQQRFIAEGKVVLNVLFSSSARFE
CCCCCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
TESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFHVHRGILAVGRRKSQPDLR
HHHEEEEHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGA
HHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHCCHHHHHHHHHHCCC
ALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSR
EEECCEECCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCHHH
LLERLETARIPMSKTFDSLNVATASGIALSRFSKFS
HHHHHHHHCCCHHHHHCCCCHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]