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The map label for this gene is rbsB [H]

Identifier: 225852076

GI number: 225852076

Start: 558313

End: 559275

Strand: Direct

Name: rbsB [H]

Synonym: BMEA_A0582

Alternate gene names: 225852076

Gene position: 558313-559275 (Clockwise)

Preceding gene: 225852075

Following gene: 225852077

Centisome position: 26.26

GC content: 57.11

Gene sequence:

>963_bases
ATGCGAAGGAATTTGATGAAGCTTGCTTTCGCTGCATTGACGGCGGGCGCGCTGGCTTTTGCCGGTGCAGCAAGCGCACA
GGATAAGAAAGTGACGATCGGAGTGTCGATCCCGGCTGCCGACCATGGCTGGACGGCAGGCGTCGTCTATCACGCCGAGC
GTGTGGCGAAGCTTCTGATGGAGGAGCATCCGGGCCTCAACGTCATCGTCAAGACGTCGCCCGATGCCGCATCGCAGGCC
AATGCTTTGCAGGATCTGGCAGTGCAAGGGTTGGATGGCCTCGTTGTCCTGCCGACTGATCCCGATCCGCTGGTCAACGC
CATCAAGGAGATCAAGGACAAGGGGACCTTCGTCGCTCTGGTAGACCGCGCGCCGAGCAACAACGACAATACCATCCGCG
ATCTTTACGTGGCTGGTAACAAGCCCGCACTGGGGCAGGTGGCCGGTGAATATATCAAGGCCACGACCCCGGATGCACAG
GTCGTCGTCATTCGCGGCCTGCCAATCCCGATCGATCAGCAGCGCCAGGACGGTTTCGATAAGGGTATCGAGGGCTCCAA
TGTCAAGGTGCTTGACCGCCAATATGGTAACTGGAACCGCGACGATGCCTTCCGCGTGATGCAGGACTTCCTGACCAAAT
ATCCGAAGATTGATGTGGTCTGGGCGCAGGATGACGACATGCTGGTTGGCGTTCTCGAAGCTATCAAGCAGTCCAATCGC
TCCGACATTCAATATGTCGTGGGCGGCGCCGGGTCCAAGGATATGATTAAGCGCGTCATGGATGGCGACAAGCTTGTGCC
GGTTGATGTGCTTTATCCGCCAGCGATGGTTTCAACCGCAATGGAACTCGCCGCCGGTCATTTCTATGACCAGATTCCGG
TCAGCGGCGACTATATCCTCGACGCAACGCTCGTCACCGAGGATAATGCCAAAGATTTCTATTTCCCAGATTCTCCATTC
TGA

Upstream 100 bases:

>100_bases
GCGTTCGCTGTCCAGAAGATAGGTCTATGGACTGGCGGAATTGTTGGGGCGATTCCAGCCAGAGAGGAATGAGAGCCCCG
CGTTTACTGGGAGGAAGACC

Downstream 100 bases:

>100_bases
TCATCGTTCGGCGCACCTTGCCAGAGGCGCGCCACTATTTATTCTGGAGGAGCTACGATGAAGACGATCAAGGGGCCGGG
GATTTTTCTCGGGCAGTTTG

Product: hypothetical protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLMEEHPGLNVIVKTSPDAASQA
NALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVALVDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPDAQ
VVVIRGLPIPIDQQRQDGFDKGIEGSNVKVLDRQYGNWNRDDAFRVMQDFLTKYPKIDVVWAQDDDMLVGVLEAIKQSNR
SDIQYVVGGAGSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYILDATLVTEDNAKDFYFPDSPF

Sequences:

>Translated_320_residues
MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLMEEHPGLNVIVKTSPDAASQA
NALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVALVDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPDAQ
VVVIRGLPIPIDQQRQDGFDKGIEGSNVKVLDRQYGNWNRDDAFRVMQDFLTKYPKIDVVWAQDDDMLVGVLEAIKQSNR
SDIQYVVGGAGSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYILDATLVTEDNAKDFYFPDSPF
>Mature_320_residues
MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLMEEHPGLNVIVKTSPDAASQA
NALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVALVDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPDAQ
VVVIRGLPIPIDQQRQDGFDKGIEGSNVKVLDRQYGNWNRDDAFRVMQDFLTKYPKIDVVWAQDDDMLVGVLEAIKQSNR
SDIQYVVGGAGSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYILDATLVTEDNAKDFYFPDSPF

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=219, Percent_Identity=29.6803652968037, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790674, Length=294, Percent_Identity=24.8299319727891, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34614; Mature: 34614

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLM
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EEHPGLNVIVKTSPDAASQANALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVAL
HCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEE
VDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPDAQVVVIRGLPIPIDQQRQDGFD
EECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCHH
KGIEGSNVKVLDRQYGNWNRDDAFRVMQDFLTKYPKIDVVWAQDDDMLVGVLEAIKQSNR
CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCC
SDIQYVVGGAGSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYIL
CCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEE
DATLVTEDNAKDFYFPDSPF
EEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLM
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EEHPGLNVIVKTSPDAASQANALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVAL
HCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEE
VDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPDAQVVVIRGLPIPIDQQRQDGFD
EECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCHH
KGIEGSNVKVLDRQYGNWNRDDAFRVMQDFLTKYPKIDVVWAQDDDMLVGVLEAIKQSNR
CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCC
SDIQYVVGGAGSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYIL
CCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEE
DATLVTEDNAKDFYFPDSPF
EEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]