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The map label for this gene is sodB [H]

Identifier: 225630487

GI number: 225630487

Start: 798042

End: 798659

Strand: Direct

Name: sodB [H]

Synonym: WRi_007370

Alternate gene names: 225630487

Gene position: 798042-798659 (Clockwise)

Preceding gene: 225630476

Following gene: 225630488

Centisome position: 55.19

GC content: 33.98

Gene sequence:

>618_bases
ATGAGTTTTACTTTACCTGAATTACCATACGATAAAACAGCTTTGGAGCCTTATATATCTGCAAAAACCTTAGATTTTCA
TTATGATAAGCACCATAAAGGATATTTAAATAAACTCAACGAGCTAGTTGAAAATACAGATTATCAACATGTAAAAATTG
AGGAATTAATAACAGAAGTTCATGGTAATAGCAGCAACTTGCCTATATTTAATAACGCAGCACAAGTTTGGAACCACACT
TTTTATTGGAACTCAATGAAAAAAAATGGTGGTGGTAAGCCTAAAGATAGTAGTCTTTTAGCAAAAAAAATTCAGGACGA
TATCGGTGGCTTTGATAAATTTTATGAAGAATTCTCCAACCATGGAGTAAGCCAGTTTGGCAGTGGATGGGTATGGTTAG
TGCTCGAAAAAGGTAGGTTAGGAAAGCTCAAAATCACCAAGACTCCAAATGCAGATTTGCCAATAATTTATGGCCAAGTG
CCACTACTCACTATGGATGTGTGGGAGCACGCCTATTATTTAGATTGTCAAAACCGTAGAATTGACTACATAAAAGTTTT
CCTTGATCATTTAATTAATTGGGATTTTGCAGAAGAGAATTTAAAAAAGAACACATAA

Upstream 100 bases:

>100_bases
TAATGCAATAGATACCTAAATGTTTTAGCTATTAATTATATGTTGCACAAAAGCATATATTGCCCTACCATCCAAGTAGG
TTAGAAATAAAGAGGTTTTT

Downstream 100 bases:

>100_bases
GATGAATGTACCCCGGGTAACAAAATTAGATAATGGTCTGCGCATAATAACTGAGCAGGTGCGTGATATTGATTCCGTAG
CTTTAAGCATACGAGTTGGT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELVENTDYQHVKIEELITEVHGNSSNLPIFNNAAQVWNHT
FYWNSMKKNGGGKPKDSSLLAKKIQDDIGGFDKFYEEFSNHGVSQFGSGWVWLVLEKGRLGKLKITKTPNADLPIIYGQV
PLLTMDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFAEENLKKNT

Sequences:

>Translated_205_residues
MSFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELVENTDYQHVKIEELITEVHGNSSNLPIFNNAAQVWNHT
FYWNSMKKNGGGKPKDSSLLAKKIQDDIGGFDKFYEEFSNHGVSQFGSGWVWLVLEKGRLGKLKITKTPNADLPIIYGQV
PLLTMDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFAEENLKKNT
>Mature_204_residues
SFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELVENTDYQHVKIEELITEVHGNSSNLPIFNNAAQVWNHTF
YWNSMKKNGGGKPKDSSLLAKKIQDDIGGFDKFYEEFSNHGVSQFGSGWVWLVLEKGRLGKLKITKTPNADLPIIYGQVP
LLTMDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFAEENLKKNT

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=42.6395939086294, Blast_Score=141, Evalue=5e-34,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=42.6395939086294, Blast_Score=141, Evalue=5e-34,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=35.3535353535354, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI1787946, Length=203, Percent_Identity=46.7980295566502, Blast_Score=193, Evalue=8e-51,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=41.4285714285714, Blast_Score=144, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17506561, Length=208, Percent_Identity=35.5769230769231, Blast_Score=114, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=35.3535353535354, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=32.3671497584541, Blast_Score=105, Evalue=4e-24,
Organism=Drosophila melanogaster, GI17136812, Length=193, Percent_Identity=37.3056994818653, Blast_Score=115, Evalue=2e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23857; Mature: 23726

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELVENTDYQHVKIEELITEV
CCCCCCCCCCCCHHHCHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHH
HGNSSNLPIFNNAAQVWNHTFYWNSMKKNGGGKPKDSSLLAKKIQDDIGGFDKFYEEFSN
CCCCCCCCEECCHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHC
HGVSQFGSGWVWLVLEKGRLGKLKITKTPNADLPIIYGQVPLLTMDVWEHAYYLDCQNRR
CCHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCEEECCCCEEEHHHHHCEEEEECCCCC
IDYIKVFLDHLINWDFAEENLKKNT
HHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
SFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELVENTDYQHVKIEELITEV
CCCCCCCCCCCHHHCHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHH
HGNSSNLPIFNNAAQVWNHTFYWNSMKKNGGGKPKDSSLLAKKIQDDIGGFDKFYEEFSN
CCCCCCCCEECCHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHC
HGVSQFGSGWVWLVLEKGRLGKLKITKTPNADLPIIYGQVPLLTMDVWEHAYYLDCQNRR
CCHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCEEECCCCEEEHHHHHCEEEEECCCCC
IDYIKVFLDHLINWDFAEENLKKNT
HHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]