Click here to switch to the map view.

The map label for this gene is 225630482

Identifier: 225630482

GI number: 225630482

Start: 792770

End: 793591

Strand: Reverse

Name: 225630482

Synonym: WRi_007320

Alternate gene names: NA

Gene position: 793591-792770 (Counterclockwise)

Preceding gene: 225630483

Following gene: 225630481

Centisome position: 54.89

GC content: 35.4

Gene sequence:

>822_bases
ATGCTTAATTCTTTATTGGTATTTGATATTGAAACTATACCAGATGTAAATTCCTGCAAAAATTTACTCAATATTAGTGA
TGATAGTAGTGTAGAAGAGAAGAGGGATGCATTAACAAAATATCATCTTGAAATAACAAACGGGCAAAACTCTTTTCTGC
GTCAGCCTTTTCACCTTGTTGTAGTTATTAGTTTTTTACTTTGCAATATAAGCTACCAGAGTGGTTATGAGGTGTTCACA
CTGCAAGAAATAAGATCTGGAGGCACACTAAATTCCAGTGAAAAGGAGCTAGTGAAAGGATTTTTTAACTACATATCAGA
GAAAAAGCCAAGATTAGTTTCGTTCAACGGACGCACTTTTGATATACCAGTGCTGAAGTATCGTGCTATGGTCCATGGCA
TTCAAGCAGAATATTTTCATAAAGCTGGCGATAAGTGGAATAGTTACAATCAGAGATATAGCAGTGATTGGCATTGTGAT
TTGCTTGAATCCCTCTCTGATTTTGGAGCTTCTGCGAGAGTAAAAATGAACGAAGTTTGTGCAGCATTTAATCTTCCTGG
TAAGATTGGAGTTGATGGGTCACAAGTTATGGGCTTATACGATAGCGGCAAGATACAAGAGATTCGAGATTATTGTGAAA
CAGATGTAATTAACACTTATTTGATTTACTTAAGGTTCATGCATCATCAGGGAAGGATTACTACTGAAAGCTACAACAAA
AGTGTGGAAGAGCTACTTTTAGAGTGCGAAAAAAAAGAATACCTAAAGAAATTTAAAGAAGAATGGCAAATAACTTGTGG
TGGAAAAATTTTACTTCCATAG

Upstream 100 bases:

>100_bases
GCGCGTGCTGAACTAGAAAAATTATTTGAGTGCAAGGTACACCTCTTTTTATTTGTGAAAGTGCGACCTTGGATCGACCG
TCCGGAGGAGTATATAGGCA

Downstream 100 bases:

>100_bases
AATAAATAGTCGAGTTATAATGCACTAACAAGCGAACCTCTGTACTAAATTTTGGTTAATATACACGTTGAGCATATTAA
GAAAGTTGCTTTTAAGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: 3-5' Exonuclease PolB-Like Protein; Polysaccharide Biosynthesis Protein; Propable PolB; Polysaccharide Biosynthesis Protein WlaX; Lipoprotein SmpA/OmlA Family; 3&Apos; 3-5' Exonuclease PolB; Large-Conductance Mechanosensitive Channel

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLVVVISFLLCNISYQSGYEVFT
LQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTFDIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCD
LLESLSDFGASARVKMNEVCAAFNLPGKIGVDGSQVMGLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNK
SVEELLLECEKKEYLKKFKEEWQITCGGKILLP

Sequences:

>Translated_273_residues
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLVVVISFLLCNISYQSGYEVFT
LQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTFDIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCD
LLESLSDFGASARVKMNEVCAAFNLPGKIGVDGSQVMGLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNK
SVEELLLECEKKEYLKKFKEEWQITCGGKILLP
>Mature_273_residues
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLVVVISFLLCNISYQSGYEVFT
LQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTFDIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCD
LLESLSDFGASARVKMNEVCAAFNLPGKIGVDGSQVMGLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNK
SVEELLLECEKKEYLKKFKEEWQITCGGKILLP

Specific function: Unknown

COG id: COG3298

COG function: function code L; Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31427; Mature: 31427

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLV
CCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHCHHHHH
VVISFLLCNISYQSGYEVFTLQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTF
HHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEE
DIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCDLLESLSDFGASARVKMNEVC
ECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHH
AAFNLPGKIGVDGSQVMGLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNK
HHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
SVEELLLECEKKEYLKKFKEEWQITCGGKILLP
HHHHHHHHHHHHHHHHHHHHHCEEEECCEEECC
>Mature Secondary Structure
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLV
CCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHCHHHHH
VVISFLLCNISYQSGYEVFTLQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTF
HHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEE
DIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCDLLESLSDFGASARVKMNEVC
ECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHH
AAFNLPGKIGVDGSQVMGLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNK
HHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
SVEELLLECEKKEYLKKFKEEWQITCGGKILLP
HHHHHHHHHHHHHHHHHHHHHCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA