Click here to switch to the map view.

The map label for this gene is yfgC [H]

Identifier: 225630271

GI number: 225630271

Start: 534752

End: 536032

Strand: Reverse

Name: yfgC [H]

Synonym: WRi_004890

Alternate gene names: 225630271

Gene position: 536032-534752 (Counterclockwise)

Preceding gene: 225630272

Following gene: 225630268

Centisome position: 37.07

GC content: 32.55

Gene sequence:

>1281_bases
ATGTTTAGAGTTGCTAAGTTTTTGACCTTATTGTTCTTTTTTGCATATTGTAATAATGCTTACTCTATTAACATTATTAG
AGATAGTGAAGTGGAAGCAATAGTGAAAGAGCTAGCGCAACCTTTATTTTCTGCTGCGGATATTGATCATGAGCAAATAA
AAGTTTTTATAATTAATGACAATTCGATTAATGCTTTTGTAATTAACAATAACAGTATTTTCATTCATTTAGGACTTTTA
CAATATTCGGCTAAACCTTATGTCCTGCTTGGTATATTAGCACATGAGATTGCTCACATATCTGCTGGTCATATATTGCA
AATGAGTAGTGCTATGGGTTATTTTCAATCGATAGCAATGATTAGTTATATGGTAGGATTAGTTTCTAGTATTATCATTA
ACCCTCAGGTTGCTGGTGCAATTTTGCTTAGTGGTGTAGCGTTTAGTTCAAGGCTATTTTTTAACTATTCTCAAGAGCAA
GAAAGTGTAGCAGATAGCTATGCTTTAAGGTATCTTGATGAATCTGGCTATGATAATTCAGGTATGAAAGAGATTTTTGA
TTATTTTAAAAGTATTGAGCATGAGAACACCGAGGAATATTTCCGCACTCACCCACTTAGTGAGAAACGCATATTTGCTG
TACAAAATTATAAGGTTAAAAACAACGTAAAACCAATTTTTGCGGATAAGTTACTAAAGTTTGAGCGTGTGGTTGCAAAG
CTAGACTCTTTCTTTGCTCCTATTCATGTGTTATCTAATAAATATGAAGATAATTCTGAGTATGTAAATGCTATAGTTTG
CTATAGGCAAGGAAAGATAGAAGAGGCTATTGCTAAAGTTAACTCATTGATTCAAGAATCACACAGTGATCCATACCTAT
ATGAATTAAAAGCAGAAATGCTATACAAGGCTGGAAATTTAAGTGAAGCAATAAAAATGTATGAGGAATCGCTTAGGTAT
TTATCTGAGAAAAACAGTTATTTAGTGAAACTTGCATTATCTCATACTTTATTATTACACGGTGATGCAAAAAAGGCGAT
TTTTTACCTGGAGCAGATTTTGAATGTAGAACCAAATAACGCTTTTGTCTGGAAATATTTAAGCATTGCATATAAATGTG
AAGCTGATACGGCAATGCATTATTTTGCCTTGACAAAAAAGGCTTGTATTGAAGGTGATTTAAAGCAATTTATGAAATAC
GCTGAGTTAGCTGTTAAAACTCTACCAAAAGATAGCCCTTATTTGTTGCAAGTTGAAGATATGAAGCGGTTTAATGGATA
A

Upstream 100 bases:

>100_bases
TTATCAGTTACGTTAAAAATTTAAACTAGCGTTTATAAATTTGTATAATTTAAGTGTTAAAATATAGAATTTCTATAAAT
TATACAAGCACAGAATTTTC

Downstream 100 bases:

>100_bases
CAAAAAAGCATTTCTGCACTTTTTGGATTATTTTTGTCCACACTTTTCCAACATAGTTTTTGCTTCATCGCTTACGTTGG
GCATAATTTTCGTTATGATA

Product: peptidase, M48 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MFRVAKFLTLLFFFAYCNNAYSINIIRDSEVEAIVKELAQPLFSAADIDHEQIKVFIINDNSINAFVINNNSIFIHLGLL
QYSAKPYVLLGILAHEIAHISAGHILQMSSAMGYFQSIAMISYMVGLVSSIIINPQVAGAILLSGVAFSSRLFFNYSQEQ
ESVADSYALRYLDESGYDNSGMKEIFDYFKSIEHENTEEYFRTHPLSEKRIFAVQNYKVKNNVKPIFADKLLKFERVVAK
LDSFFAPIHVLSNKYEDNSEYVNAIVCYRQGKIEEAIAKVNSLIQESHSDPYLYELKAEMLYKAGNLSEAIKMYEESLRY
LSEKNSYLVKLALSHTLLLHGDAKKAIFYLEQILNVEPNNAFVWKYLSIAYKCEADTAMHYFALTKKACIEGDLKQFMKY
AELAVKTLPKDSPYLLQVEDMKRFNG

Sequences:

>Translated_426_residues
MFRVAKFLTLLFFFAYCNNAYSINIIRDSEVEAIVKELAQPLFSAADIDHEQIKVFIINDNSINAFVINNNSIFIHLGLL
QYSAKPYVLLGILAHEIAHISAGHILQMSSAMGYFQSIAMISYMVGLVSSIIINPQVAGAILLSGVAFSSRLFFNYSQEQ
ESVADSYALRYLDESGYDNSGMKEIFDYFKSIEHENTEEYFRTHPLSEKRIFAVQNYKVKNNVKPIFADKLLKFERVVAK
LDSFFAPIHVLSNKYEDNSEYVNAIVCYRQGKIEEAIAKVNSLIQESHSDPYLYELKAEMLYKAGNLSEAIKMYEESLRY
LSEKNSYLVKLALSHTLLLHGDAKKAIFYLEQILNVEPNNAFVWKYLSIAYKCEADTAMHYFALTKKACIEGDLKQFMKY
AELAVKTLPKDSPYLLQVEDMKRFNG
>Mature_426_residues
MFRVAKFLTLLFFFAYCNNAYSINIIRDSEVEAIVKELAQPLFSAADIDHEQIKVFIINDNSINAFVINNNSIFIHLGLL
QYSAKPYVLLGILAHEIAHISAGHILQMSSAMGYFQSIAMISYMVGLVSSIIINPQVAGAILLSGVAFSSRLFFNYSQEQ
ESVADSYALRYLDESGYDNSGMKEIFDYFKSIEHENTEEYFRTHPLSEKRIFAVQNYKVKNNVKPIFADKLLKFERVVAK
LDSFFAPIHVLSNKYEDNSEYVNAIVCYRQGKIEEAIAKVNSLIQESHSDPYLYELKAEMLYKAGNLSEAIKMYEESLRY
LSEKNSYLVKLALSHTLLLHGDAKKAIFYLEQILNVEPNNAFVWKYLSIAYKCEADTAMHYFALTKKACIEGDLKQFMKY
AELAVKTLPKDSPYLLQVEDMKRFNG

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=210, Percent_Identity=27.1428571428571, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 48714; Mature: 48714

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50293 TPR_REGION ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRVAKFLTLLFFFAYCNNAYSINIIRDSEVEAIVKELAQPLFSAADIDHEQIKVFIIND
CCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEC
NSINAFVINNNSIFIHLGLLQYSAKPYVLLGILAHEIAHISAGHILQMSSAMGYFQSIAM
CCEEEEEEECCEEEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ISYMVGLVSSIIINPQVAGAILLSGVAFSSRLFFNYSQEQESVADSYALRYLDESGYDNS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCCCCC
GMKEIFDYFKSIEHENTEEYFRTHPLSEKRIFAVQNYKVKNNVKPIFADKLLKFERVVAK
CHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHHHHH
LDSFFAPIHVLSNKYEDNSEYVNAIVCYRQGKIEEAIAKVNSLIQESHSDPYLYELKAEM
HHHHHHHHHHHHCCCCCCHHHEEHEEEEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH
LYKAGNLSEAIKMYEESLRYLSEKNSYLVKLALSHTLLLHGDAKKAIFYLEQILNVEPNN
HHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHCCCCCC
AFVWKYLSIAYKCEADTAMHYFALTKKACIEGDLKQFMKYAELAVKTLPKDSPYLLQVED
EEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
MKRFNG
HHCCCC
>Mature Secondary Structure
MFRVAKFLTLLFFFAYCNNAYSINIIRDSEVEAIVKELAQPLFSAADIDHEQIKVFIIND
CCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEC
NSINAFVINNNSIFIHLGLLQYSAKPYVLLGILAHEIAHISAGHILQMSSAMGYFQSIAM
CCEEEEEEECCEEEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ISYMVGLVSSIIINPQVAGAILLSGVAFSSRLFFNYSQEQESVADSYALRYLDESGYDNS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCCCCC
GMKEIFDYFKSIEHENTEEYFRTHPLSEKRIFAVQNYKVKNNVKPIFADKLLKFERVVAK
CHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHHHHH
LDSFFAPIHVLSNKYEDNSEYVNAIVCYRQGKIEEAIAKVNSLIQESHSDPYLYELKAEM
HHHHHHHHHHHHCCCCCCHHHEEHEEEEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH
LYKAGNLSEAIKMYEESLRYLSEKNSYLVKLALSHTLLLHGDAKKAIFYLEQILNVEPNN
HHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHCCCCCC
AFVWKYLSIAYKCEADTAMHYFALTKKACIEGDLKQFMKYAELAVKTLPKDSPYLLQVED
EEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
MKRFNG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]