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The map label for this gene is ccmC [H]

Identifier: 225630236

GI number: 225630236

Start: 478866

End: 479576

Strand: Direct

Name: ccmC [H]

Synonym: WRi_004480

Alternate gene names: 225630236

Gene position: 478866-479576 (Clockwise)

Preceding gene: 225630232

Following gene: 225630237

Centisome position: 33.12

GC content: 37.55

Gene sequence:

>711_bases
ATGTTTTTATTAAAGCCTACAAATTTCTCTTATTTTTCTAAGAAAGCTCTACCTTGGCTTGGGGTGATTTGTTTCGCATG
TTTTTTAATTGGAATGTCTTTGGCGTTATTCTTCTCCCCAGAAGATTATAAACAAGGAGAAATTGTACGAATTATGTATC
TTCATGTGCCTTCTGCATGGCTTGCTCTTGGAATATATGGATTAATTGCATCACTCAGTTTCATTTCATTGGTGTGGAAC
AATAGCATTGCTAGTGTCTTGGCACATGCTGCTGCTCCTGCAGGGACAGTCTTTTCGGCAATATGTTTAATCACAGGCAG
CATCTGGGGAAAAGGAACCTGGGGCACTTGGTGGGTATGGGATGCAAGGCTTACTTCAATGCTGATTTTATTTTTCCTAT
ATGTTGGCTACCTTTCATTGTGGAGCGCTTTTGATAATGAAGCGAGGGCAGAAAAATCAGCAGCAGTATTTGCCATTTTT
AGTGCTATAAATATTCCCATAGTAAAATTTTCTGTGAATTTATGGTCTACTCTTCATCAGCCTGCAAGCATTTTGAGAAG
AGGTGGAGTAGCAATAGAAGGTTCTTTGCTGTTGCCACTCATTGTAATGTTTATGTTTTGTGCCACATTTTTTTTAGTAG
TGTGGATACTGTATTCGCTTTACTTAATTAATTTATATAAGATAAAGAGAGAAATTAGTGTGCGGTATTAG

Upstream 100 bases:

>100_bases
ATTATGCTAATTTGTTGACCTACGTAAATATAGAAAAACTATCCTGTTGATAAAACTCAAACTAATTGGTAAATTCTTAA
CACAATTATTCTCAAAATGA

Downstream 100 bases:

>100_bases
ATAGTCTTGCAATTCTATAGCTAAAGTGGCTTGGGTTTATCTACAATTTGAAAAACAACAAATTCGTCATTCCGCTACTC
GTTAGCGGAATCTATGCTGA

Product: heme exporter protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycZ [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MFLLKPTNFSYFSKKALPWLGVICFACFLIGMSLALFFSPEDYKQGEIVRIMYLHVPSAWLALGIYGLIASLSFISLVWN
NSIASVLAHAAAPAGTVFSAICLITGSIWGKGTWGTWWVWDARLTSMLILFFLYVGYLSLWSAFDNEARAEKSAAVFAIF
SAINIPIVKFSVNLWSTLHQPASILRRGGVAIEGSLLLPLIVMFMFCATFFLVVWILYSLYLINLYKIKREISVRY

Sequences:

>Translated_236_residues
MFLLKPTNFSYFSKKALPWLGVICFACFLIGMSLALFFSPEDYKQGEIVRIMYLHVPSAWLALGIYGLIASLSFISLVWN
NSIASVLAHAAAPAGTVFSAICLITGSIWGKGTWGTWWVWDARLTSMLILFFLYVGYLSLWSAFDNEARAEKSAAVFAIF
SAINIPIVKFSVNLWSTLHQPASILRRGGVAIEGSLLLPLIVMFMFCATFFLVVWILYSLYLINLYKIKREISVRY
>Mature_236_residues
MFLLKPTNFSYFSKKALPWLGVICFACFLIGMSLALFFSPEDYKQGEIVRIMYLHVPSAWLALGIYGLIASLSFISLVWN
NSIASVLAHAAAPAGTVFSAICLITGSIWGKGTWGTWWVWDARLTSMLILFFLYVGYLSLWSAFDNEARAEKSAAVFAIF
SAINIPIVKFSVNLWSTLHQPASILRRGGVAIEGSLLLPLIVMFMFCATFFLVVWILYSLYLINLYKIKREISVRY

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=184, Percent_Identity=44.5652173913043, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 26544; Mature: 26544

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLKPTNFSYFSKKALPWLGVICFACFLIGMSLALFFSPEDYKQGEIVRIMYLHVPSAW
CEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHH
LALGIYGLIASLSFISLVWNNSIASVLAHAAAPAGTVFSAICLITGSIWGKGTWGTWWVW
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
DARLTSMLILFFLYVGYLSLWSAFDNEARAEKSAAVFAIFSAINIPIVKFSVNLWSTLHQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH
PASILRRGGVAIEGSLLLPLIVMFMFCATFFLVVWILYSLYLINLYKIKREISVRY
HHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLLKPTNFSYFSKKALPWLGVICFACFLIGMSLALFFSPEDYKQGEIVRIMYLHVPSAW
CEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHH
LALGIYGLIASLSFISLVWNNSIASVLAHAAAPAGTVFSAICLITGSIWGKGTWGTWWVW
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
DARLTSMLILFFLYVGYLSLWSAFDNEARAEKSAAVFAIFSAINIPIVKFSVNLWSTLHQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH
PASILRRGGVAIEGSLLLPLIVMFMFCATFFLVVWILYSLYLINLYKIKREISVRY
HHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1850420; 12597275 [H]