Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 225630131

GI number: 225630131

Start: 337353

End: 338951

Strand: Reverse

Name: ydaM [H]

Synonym: WRi_003130

Alternate gene names: 225630131

Gene position: 338951-337353 (Counterclockwise)

Preceding gene: 225630132

Following gene: 225630130

Centisome position: 23.44

GC content: 32.08

Gene sequence:

>1599_bases
ATGCCTATACTTCAAGCTGATAATGTAGAAAAAATTAAGTTTGATTCTAGTTTATGCAAAGAGCAAGAGAAACTTTTTTA
CTATAAATTTAATATAATTCCTTGGCAAAAATTAAATAATACTACTTTTTTTATGGTTGAAGACACAAGCCGAGATATCA
ACCGTTGGGTCGAAGCTCATTACGGTATTGACTATGTATTAATAAAAGTGGATAGCGAACAGATTTTAAATCTTCTTAAC
TCGCACTTTGGTATTTCAGAATTTGCAAGCAACTACTTATATTACAAGAATCCTAATTTTTCAGCTAAAAGCATTAAACT
AAGCTCAATATTTTTTGCTTCTTTCTTTATTGTAACTTCAATTTTAACACTAACAGAGAAATATACATATTTTGCTTTGA
TGTTGATATTTATAATCGGATGTTCTAGTTATTTATTCAAGTTTATAGCTACAATTTTTAACTTATGTGAAACCTCTAAT
CAAAAAGTGGATTATAGTAAGCTGAATGAAGAAGATTTTCCTATATATACTATTTTATTGCCTGCTTTTAAAGAAAGTGC
AGTGATAGAGCAATTGATCGAAAGCATTGAAAGTTTGGATTATCCAAAATCAAAATTAGATGTGAAGCTTCAGGTAGAAA
GTGATGACCAAGAAACGCTAGCAGCTATAGAAAAGTACACTTTACCGCAGTATTTTGAAGTAATAAAAGTGCCTCATTCT
TTGCCTAGAACAAAAGCCAAGTCATGCAATTATGCTATGAGCTTTGCTAGAGGAAAGTATGCAGTAATATATGATGCGGA
CGATAAACCAGACCCATTGCAGTTAAAAAAAGCACTGATTGAATTTAATAAGGGCGACGATAAGTTAGCCTGTGTACAGG
CGAAATTAAATTACTATAATTGTGATTGTAATTTTCTCACAAAATCCTTTTCTCTGGAGTATATGAACTGGTTTCAATAC
TTATTGCCTGGATTCCAAAAAATGAACATGCCAATGCCTTTGGGTGGTAGCAGTAATCATTTTTCAGTAAAAATTCTAAG
AAAAATGTTTTTCTGGGATGCTTATAGTGTTACCGAAGATGCTGACCTCGGTTTGAGACTTGCGCAAATGGGATATAAAA
CCAGGATGATTGACTCAGAAACATTGGAAGAGTCACCAATTGCTGTATTTGCTTGGATTAAGCAAAGAGCGCGCTGGATC
AAAGGCTATATGCAAACTTATATTGTTCATTTAAAAAATATAAAGTCTCTTTATAAACACACTGGATTTAAGGGAATTTT
GCTATTGAATCTTTTTGTTGGCTCTGCAGCTTTTTTATTTTTTACTACTCCATTTTTACTGCTTTCATTGATATTAACTA
AAGTTTTAAATGAATTATTTTTGTACTACTTTGTAGTGGTATACGTTACTAACCTGATTCTTTTGGTAATAGCTGTCAAA
CAGCAAAAGATGCCTTTTTATTTTTATATAGTATCGATATTTTTTCCGGTCTATAGTCTGCTACATAGTGTTGCAGCTTT
TCTTGCCTTATGGGAATTTATTCTTTACCCTGAGCGATGGAACAAAACTCAGCATGGTTTATGGAAGCAAAACCTGTAG

Upstream 100 bases:

>100_bases
CTGTAAAAAAAATAATGCATGAACGTAAAGATGATAAGCGTAGTAGCGAGGTCATATCTTCATTTTCACGTGACTTAAAT
AAAAAATTGCATTAGGTTTA

Downstream 100 bases:

>100_bases
CTATTTGGCTTTTTCTCTGCTCGGTCATGGTAATTCTCATGGTAGGAATTGGTGGATTTACCAGACTTTCAAAAGCAGGA
TTGTCAATCACGGAGTGGAA

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLN
SHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSN
QKVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHS
LPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYNCDCNFLTKSFSLEYMNWFQY
LLPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWI
KGYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVK
QQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL

Sequences:

>Translated_532_residues
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLN
SHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSN
QKVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHS
LPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYNCDCNFLTKSFSLEYMNWFQY
LLPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWI
KGYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVK
QQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
>Mature_531_residues
PILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLNS
HFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSNQ
KVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHSL
PRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYNCDCNFLTKSFSLEYMNWFQYL
LPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIK
GYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVKQ
QKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 62188; Mature: 62057

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAH
CCCCCCCCCCCEECCHHHHHHHHCEEEEEEEEEEHHCCCCEEEEEEECCCHHHHHHHHHH
YGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTS
CCCEEEEEEECHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCCCEEHHHHHHHHHHHHHH
ILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSNQKVDYSKLNEEDFPIYTILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEE
PAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCCCC
LPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYN
CCCCHHCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCEEE
CDCNFLTKSFSLEYMNWFQYLLPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTED
CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
ADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKH
CCCCHHHHHCCCHHEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAH
CCCCCCCCCCEECCHHHHHHHHCEEEEEEEEEEHHCCCCEEEEEEECCCHHHHHHHHHH
YGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTS
CCCEEEEEEECHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCCCEEHHHHHHHHHHHHHH
ILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSNQKVDYSKLNEEDFPIYTILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEE
PAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCCCC
LPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYN
CCCCHHCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCEEE
CDCNFLTKSFSLEYMNWFQYLLPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTED
CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
ADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKH
CCCCHHHHHCCCHHEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]