| Definition | Wolbachia sp. wRi, complete genome. |
|---|---|
| Accession | NC_012416 |
| Length | 1,445,873 |
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The map label for this gene is clpB [H]
Identifier: 225630044
GI number: 225630044
Start: 216135
End: 218735
Strand: Reverse
Name: clpB [H]
Synonym: WRi_002130
Alternate gene names: 225630044
Gene position: 218735-216135 (Counterclockwise)
Preceding gene: 225630046
Following gene: 225630043
Centisome position: 15.13
GC content: 37.56
Gene sequence:
>2601_bases TTGTTATATACATCAGCAAATACGAATTTAACTGGTGTTATGGACTTAAATAAATTTACCGAAAAAGCAAAAAGTCTAAT TCAAAGTGCTCAAATGAAAGCGTTGGGAGCTGGGCATCAGATTTTTATGCCTGAGCATTTACTAAAAGTGATGCTTGAAG ATGAATCAGGTTTAGTTCAGGATTTGATAAACGCTTGTGGTGGAAGTGTGCAAAGTATTTCTGATGCTGTGGATAGCGCA ATAAAAAAGTTGCCAGTAATTGAAGGTCCAGGAAGTGGTGGCCTTCAACTTTCAAGAGAAATAGCAAAAGTTTTTGAAGA TTCAATTGGTATTGCAAGAAGAAATAAAGATTCATTTGTTGCTGTTGAGCGTTTACTACAGGGCCTCACTGCACAAAAAG ATGATACTGTAGGCAAAATTCTGGCAGAGAATGGTGTGACTCTACAAAAACTGAACTCAGTTATTGCAGAAATGAGACAA GGCAGCAGTGCGGACTCGCCAAACAGTGAGGAAAAATTAAACGCGGCAAAGAAATATACAAAAGATGTTACAGAGCTTGC TATGCAAGGAAAGCTTGATCCTGTAATTGGTCGTGATGAAGAGATCAGAAGAACTATGCAGGTATCACTGAGGCGGACAA AAAATAATCCAGTGCTGATCGGTGAACCTGGTGTTGGAAAAACTGCAATAGTTGAGGGGCTTGCAAATAGAATTGTTGCA AACGATGTGCCACTTGGTTTGCATGATGCAAAGGTCTTAGCTTTGGATCTTGGAGCACTAATTGCTGGCACTAAGTTTAG AGGAGAGTTTGAGGAAAGGTTAAAAGCAGTGATTAATGAGATTTCGAGAGCGGAGGGAAAAATTATATTATTCATCGATG AATTGCACACTTTAGTTGGAGCAGGAGCAACAAGTGGTGCAATGGATGCCTCGAATCTGCTGAAGCCTGCTCTTGCACGT GGAGAAATTCGCTGTATAGGAGCCACAACTTTAGATGAATATCGTCAGCATATAGAAAAAGATCCTGCACTTGCAAGGCG TTTTCAGCCTGTGTTTATTTCTCAACCAACTGAAACTGATACCATTTCAATACTCAGGGGTTTGAAGGAAAGATATGAGG TGCATCATGGTATAAGAATTACAGACGGTGCAATAATTGCTGCTGCAACGTTGTCCAATAGATATATAACAGATAGGTTT TCACCTGATAAAGCAATTGATTTGATTGATGAAGCAGCAAGTAGGGTGAGAATTGAAATGGATAGCAAGCCTGAAGTTAT TGATGAACTTGAGAGAAAGGTTATACAGCTAAAGATTGAAGCAGAGGCTTTAAAAAAAGAAAGTGATGAAAATTCTAAAC AGCGTTTAAAAAAGATAAATGAAGAGATCGAAAATCTAAACAGTAAATTTGCTGACTTGAACAGCAAATGGCAGATGGAA AAGAATAAAATAGCTAGAATACAAGAAACAGCCGAAAAATTAGATAACGCTAGAAAAGAGCTGGAATTGGCTCAGCGGAG TGGAAATTTAGGAAAAGCAGGAGAGCTGATGTATGGTGTGATCCCTCAGCTTGAGAATGAATTAAAAAATCAGGAAAAGG TTACTGATAGTTTCTTAAAGAAAGAAGTGACTGGAGATGATATTGCAAACATTGTTTCAAAGTGGACGGGAATTCCAGTT GATAATATGATGCATAGTGAAAAGGAAAAACTCCTTAACATGGAGAATGAAATAGGAAGAAGAGTAATAGGGCAGAAAGA TGCAATAGAAGCGATAAGTAATGCAGTTAGGCGCTCCCGCTCTGGGGTGCAAGATACCAACAGGCCTTTTGGTTCATTTT TATTTTTAGGTCCAACTGGAGTTGGTAAAACTGAACTTGCGAAAGCCTTAGCTGAATTTCTGTTTGACGATCAATCAGCG CTTCTGCGTTTTGATATGTCAGAATATATGGAAAAACATTCTGTTTCAAAGTTAATTGGCGCGCCTCCAGGGTATGTTGG CTATGAACAAGGTGGCAGATTAACTGAAGCAGCGAGGAGAAGACCATATCAGGTAATCTTATTTGATGAGATAGAAAAGG CAAATCCAGATATATTTAATCTATTGCTGCAAATCTTGGATGAGGGGAGACTCACTGATAGTCATGGCAAATTGATTGAT TTTCGCAATACCATACTGATTTTAACTTCTAACCTTGGCGCTGAGATAATGCTAAAAGGGAATGTTGATTCTGTAAGAAA TGAAGTGATGCAAATAGTTAAATCAACATTTCGTCCAGAATTTTTAAACAGGCTGGATGAAATTATTATATTTCACAGTT TAACCAGAGATGACATCTATAAAATTATAGATGTTCAATTTTCTTATTTACAAAAAACACTTGCTAAGCGTAAACTGAGT ATAAGTTTGTCGCAGGAAGCTAAAGAACTAATAGCACAAACTGGCTATGACCCTGAATATGGAGCAAGGCCCTTAAAAAG GGTTATACAAGAGTGTATTCAAAATAATTTAGCTAAATTAGTTTTATCAGGGGAAGTAGTAGAAAATGATGAGCTAATAG TGTACGCTCTTGATAATGAAATCTTAGTTAAAAAGGTTTAA
Upstream 100 bases:
>100_bases CAAGATATTTGTATGGTTACTATGATAGTTCCTTTTTTAAGAAAGTTTTAAATTTCATACCTAACAATAAACAACTTTAG GTTTAAATTTATGAAATCAG
Downstream 100 bases:
>100_bases GTTCACTGTGTATTTTTGTTAAAAAAAATGTGTATAGATCATAATGTTGACACTGAGTCTTTATTTAAGTTAGCTGATCA AGAAAATCAGCAAGATAAAG
Product: ATP-dependent Clp protease, ATP-binding subunit ClpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MLYTSANTNLTGVMDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLINACGGSVQSISDAVDSA IKKLPVIEGPGSGGLQLSREIAKVFEDSIGIARRNKDSFVAVERLLQGLTAQKDDTVGKILAENGVTLQKLNSVIAEMRQ GSSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVA NDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEISRAEGKIILFIDELHTLVGAGATSGAMDASNLLKPALAR GEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRF SPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQME KNKIARIQETAEKLDNARKELELAQRSGNLGKAGELMYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPV DNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKALAEFLFDDQSA LLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGRLTEAARRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLID FRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSTFRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLS ISLSQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEVVENDELIVYALDNEILVKKV
Sequences:
>Translated_866_residues MLYTSANTNLTGVMDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLINACGGSVQSISDAVDSA IKKLPVIEGPGSGGLQLSREIAKVFEDSIGIARRNKDSFVAVERLLQGLTAQKDDTVGKILAENGVTLQKLNSVIAEMRQ GSSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVA NDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEISRAEGKIILFIDELHTLVGAGATSGAMDASNLLKPALAR GEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRF SPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQME KNKIARIQETAEKLDNARKELELAQRSGNLGKAGELMYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPV DNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKALAEFLFDDQSA LLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGRLTEAARRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLID FRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSTFRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLS ISLSQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEVVENDELIVYALDNEILVKKV >Mature_866_residues MLYTSANTNLTGVMDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLINACGGSVQSISDAVDSA IKKLPVIEGPGSGGLQLSREIAKVFEDSIGIARRNKDSFVAVERLLQGLTAQKDDTVGKILAENGVTLQKLNSVIAEMRQ GSSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVA NDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEISRAEGKIILFIDELHTLVGAGATSGAMDASNLLKPALAR GEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRF SPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQME KNKIARIQETAEKLDNARKELELAQRSGNLGKAGELMYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPV DNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKALAEFLFDDQSA LLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGRLTEAARRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLID FRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSTFRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLS ISLSQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEVVENDELIVYALDNEILVKKV
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=300, Percent_Identity=35.6666666666667, Blast_Score=196, Evalue=5e-50, Organism=Escherichia coli, GI1788943, Length=841, Percent_Identity=54.4589774078478, Blast_Score=932, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=325, Percent_Identity=44.6153846153846, Blast_Score=285, Evalue=1e-77, Organism=Saccharomyces cerevisiae, GI6320464, Length=709, Percent_Identity=53.0324400564175, Blast_Score=771, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=855, Percent_Identity=41.8713450292398, Blast_Score=646, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 96208; Mature: 96208
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYTSANTNLTGVMDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQ CEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHH DLINACGGSVQSISDAVDSAIKKLPVIEGPGSGGLQLSREIAKVFEDSIGIARRNKDSFV HHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHH AVERLLQGLTAQKDDTVGKILAENGVTLQKLNSVIAEMRQGSSADSPNSEEKLNAAKKYT HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH KDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH NDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEISRAEGKIILFIDELHTLVG CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHC AGATSGAMDASNLLKPALARGEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETD CCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCEEECCCCCHH TISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFSPDKAIDLIDEAASRVRIEM HHHHHHHHHHHHHHHCCEEEECCCEEEEEHHCCCEECCCCCCHHHHHHHHHHHHHEEEEE DSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQME CCCCHHHHHHHHHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH KNKIARIQETAEKLDNARKELELAQRSGNLGKAGELMYGVIPQLENELKNQEKVTDSFLK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSR HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHH SGVQDTNRPFGSFLFLGPTGVGKTELAKALAEFLFDDQSALLRFDMSEYMEKHSVSKLIG CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC APPGYVGYEQGGRLTEAARRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLID CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEE FRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSTFRPEFLNRLDEIIIFHSLTRDDIY ECCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH KIIDVQFSYLQKTLAKRKLSISLSQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKL HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH VLSGEVVENDELIVYALDNEILVKKV HHCCCEECCCCEEEEEECCCEEEECC >Mature Secondary Structure MLYTSANTNLTGVMDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQ CEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHH DLINACGGSVQSISDAVDSAIKKLPVIEGPGSGGLQLSREIAKVFEDSIGIARRNKDSFV HHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHH AVERLLQGLTAQKDDTVGKILAENGVTLQKLNSVIAEMRQGSSADSPNSEEKLNAAKKYT HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH KDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH NDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEISRAEGKIILFIDELHTLVG CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHC AGATSGAMDASNLLKPALARGEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETD CCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCEEECCCCCHH TISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFSPDKAIDLIDEAASRVRIEM HHHHHHHHHHHHHHHCCEEEECCCEEEEEHHCCCEECCCCCCHHHHHHHHHHHHHEEEEE DSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQME CCCCHHHHHHHHHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH KNKIARIQETAEKLDNARKELELAQRSGNLGKAGELMYGVIPQLENELKNQEKVTDSFLK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSR HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHH SGVQDTNRPFGSFLFLGPTGVGKTELAKALAEFLFDDQSALLRFDMSEYMEKHSVSKLIG CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC APPGYVGYEQGGRLTEAARRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLID CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEE FRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSTFRPEFLNRLDEIIIFHSLTRDDIY ECCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH KIIDVQFSYLQKTLAKRKLSISLSQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKL HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH VLSGEVVENDELIVYALDNEILVKKV HHCCCEECCCCEEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA