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The map label for this gene is ihfA [H]

Identifier: 225629912

GI number: 225629912

Start: 53511

End: 53816

Strand: Direct

Name: ihfA [H]

Synonym: WRi_000450

Alternate gene names: 225629912

Gene position: 53511-53816 (Clockwise)

Preceding gene: 225629911

Following gene: 225629913

Centisome position: 3.7

GC content: 33.01

Gene sequence:

>306_bases
ATGGATCACGTTACAACAAAAGACACAACAGTAACTAAGGCAACGATAGTTGGAGATATAAACCAAGAAATAGGATTATC
AAAGGAAGACTCTGCTTCGATAATAGATGATATATTGGACGAAATAAAGACGAGCTTGGCAAAGGATGGAATAGTGAAAA
TATCGTCATTTGGAACATTCTTGGTCAAAAAAAAGAAGGAAAGGCCAGGAAATATACCAAATACATCGGAGAAAGTGATG
ATTCAGGCAAGAAATTCAGTTTCTTTTAGGCCTTCAAAAATTATAAAAAAATCAATCAATAATTAA

Upstream 100 bases:

>100_bases
TTTAAATTATGCAACAAAAGAGACATACTCTAAAAAATAAAGTAGCTGAATCTCGAGTCGATTGCTATATTATATTTACG
TATTGTAATATTTATCAATA

Downstream 100 bases:

>100_bases
TGAACAAGGAAAAATTATTTTATACGATTGGGGAAGTAGCTGAAGAGCTACATTTGGAACAGCATGTTTTGAGATTCTGG
GAAGGTCAATTTCATCAAAT

Product: DNA-binding protein, HU family

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM
IQARNSVSFRPSKIIKKSINN

Sequences:

>Translated_101_residues
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM
IQARNSVSFRPSKIIKKSINN
>Mature_101_residues
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM
IQARNSVSFRPSKIIKKSINN

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=35.8695652173913, Blast_Score=69, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11089; Mature: 11089

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTF
CCCCCCCCCEEEEHEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHH
LVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
EEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTF
CCCCCCCCCEEEEHEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHH
LVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
EEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA