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The map label for this gene is ydcR [C]

Identifier: 222526361

GI number: 222526361

Start: 3870558

End: 3871754

Strand: Direct

Name: ydcR [C]

Synonym: Chy400_3127

Alternate gene names: 222526361

Gene position: 3870558-3871754 (Clockwise)

Preceding gene: 222526360

Following gene: 222526362

Centisome position: 73.46

GC content: 59.57

Gene sequence:

>1197_bases
ATGACCTCAACGACCGACCGCCTCGAAGCACTCTTCGCCAGCCGGGTGCGCGATGTAGTGCCGCCCCTGTTTGGTGCTGC
CGGTGAACCGGTGCGTCCCCTGATCAGCCTGTCGTATGGGCTGGCCGATCCGATACTCTTTCCCCGTGCCGAGCTGATGG
CTGCCGCAGCCGAAGTACTGGCTTACGAAGCTGCCGAGTCACTGAACTATGCGATGTCTTATCCTGGTCTGACCGATCAG
ATTGTGGCTCGCTTACAGGCTGAAGGTGTGGCCGCCCAACCCGAACATGTCCTGGTTGGCTACGGCTCCGGGCAGATTCT
GGCGCTTCTGCCGGAGATATTCGTAGAGCCGGGTGACATCGTAATCATTGAAGCACCCAGCTTTCTCGGTGCAGTGCGGC
GTTTTGTTCAGTCGGGTGCGCGTCTGATCAGCATCCCGGTCGATGAGGAAGGTATGAACGTTGAGATGCTGGCCGACACC
TTGCGCGACCTGGCGGCAAATGGTCAGCGACCGAAATTTATCTACACCATTCCCACCTTCCACAACCCAACCGGCGTGAC
CATGACTCTGCCCCGTCGTCGGCAATTGGTTGATCTGGCAGCGGAATACGGGGTACCGGTCGTTGAAGACGATGCCTACA
TTGATCTCCGCTTCGCTGGCGAACCATTGCCTTCACTGGCTGCCCTTGATCAAGATGGTTGGGTCATTCGGGTGGGTACC
TACTCCAAAATCCTGGCTCCTGGTTTACGGATTGGGTGGGTGCATGCCCGCCGCGAGATCATCGACCGCCTGCTGATGGT
GAAGGCCGAAGGCACCACCGGCCCCTTCATCACCCGGCTTGTTGCCCGCTTCTGTGCCGATGGTCGCCTCGAACGGCACA
TCGCCACCCTTCGCCAGCACTACGCAGTCAAGTGTGCAACAATGGCAGCGGCCATTCGGCGCCATTTTCCGGCAGAAGCC
AGCTTCGTCATGCCCGCTGGTGGCTTCTTCATCTGGGTCCAGTTGCCAAAGGGGGTAAGTGCCCGTGCCTTACTCGAAGC
CTCGCGGGCCCGTGGAGCAGAATTTCTGGCCGGCACCGCCTGCTTCGTCGAACGAGAGCGTGGCGATAATGCAATGCGCC
TCGCCTTCAGCTTCCAGAGCAGCGAGCGGATCGAAGAAGCAATCGCGATTATTGGCTCGGCCTTTGCCGATCTCTAG

Upstream 100 bases:

>100_bases
GGCCGGGTATTAGTCCAGTACACACTATCCATGTTATTCTGAAAACAACGAGCAGATACCTGTTGTACCAATCGCTATAG
TTAAAGAGGAGAACGCCTGC

Downstream 100 bases:

>100_bases
GAGTTCAAAAAAAATCGTACTCATCTCTTCGTGCATCGAGCACACCACATAAAGTGCTCGATGCCCTTTCTTTCCCCCGT
GCCCACCCGGCAATGCGGTT

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTSTTDRLEALFASRVRDVVPPLFGAAGEPVRPLISLSYGLADPILFPRAELMAAAAEVLAYEAAESLNYAMSYPGLTDQ
IVARLQAEGVAAQPEHVLVGYGSGQILALLPEIFVEPGDIVIIEAPSFLGAVRRFVQSGARLISIPVDEEGMNVEMLADT
LRDLAANGQRPKFIYTIPTFHNPTGVTMTLPRRRQLVDLAAEYGVPVVEDDAYIDLRFAGEPLPSLAALDQDGWVIRVGT
YSKILAPGLRIGWVHARREIIDRLLMVKAEGTTGPFITRLVARFCADGRLERHIATLRQHYAVKCATMAAAIRRHFPAEA
SFVMPAGGFFIWVQLPKGVSARALLEASRARGAEFLAGTACFVERERGDNAMRLAFSFQSSERIEEAIAIIGSAFADL

Sequences:

>Translated_398_residues
MTSTTDRLEALFASRVRDVVPPLFGAAGEPVRPLISLSYGLADPILFPRAELMAAAAEVLAYEAAESLNYAMSYPGLTDQ
IVARLQAEGVAAQPEHVLVGYGSGQILALLPEIFVEPGDIVIIEAPSFLGAVRRFVQSGARLISIPVDEEGMNVEMLADT
LRDLAANGQRPKFIYTIPTFHNPTGVTMTLPRRRQLVDLAAEYGVPVVEDDAYIDLRFAGEPLPSLAALDQDGWVIRVGT
YSKILAPGLRIGWVHARREIIDRLLMVKAEGTTGPFITRLVARFCADGRLERHIATLRQHYAVKCATMAAAIRRHFPAEA
SFVMPAGGFFIWVQLPKGVSARALLEASRARGAEFLAGTACFVERERGDNAMRLAFSFQSSERIEEAIAIIGSAFADL
>Mature_397_residues
TSTTDRLEALFASRVRDVVPPLFGAAGEPVRPLISLSYGLADPILFPRAELMAAAAEVLAYEAAESLNYAMSYPGLTDQI
VARLQAEGVAAQPEHVLVGYGSGQILALLPEIFVEPGDIVIIEAPSFLGAVRRFVQSGARLISIPVDEEGMNVEMLADTL
RDLAANGQRPKFIYTIPTFHNPTGVTMTLPRRRQLVDLAAEYGVPVVEDDAYIDLRFAGEPLPSLAALDQDGWVIRVGTY
SKILAPGLRIGWVHARREIIDRLLMVKAEGTTGPFITRLVARFCADGRLERHIATLRQHYAVKCATMAAAIRRHFPAEAS
FVMPAGGFFIWVQLPKGVSARALLEASRARGAEFLAGTACFVERERGDNAMRLAFSFQSSERIEEAIAIIGSAFADL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=394, Percent_Identity=27.6649746192893, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI33469970, Length=394, Percent_Identity=27.6649746192893, Blast_Score=152, Evalue=5e-37,
Organism=Escherichia coli, GI1787710, Length=359, Percent_Identity=30.6406685236769, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1790797, Length=327, Percent_Identity=31.1926605504587, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788722, Length=313, Percent_Identity=25.5591054313099, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=259, Percent_Identity=28.1853281853282, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321000, Length=243, Percent_Identity=27.5720164609054, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6321929, Length=232, Percent_Identity=27.1551724137931, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356535, Length=320, Percent_Identity=24.0625, Blast_Score=111, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 43309; Mature: 43177

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTTDRLEALFASRVRDVVPPLFGAAGEPVRPLISLSYGLADPILFPRAELMAAAAEVL
CCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AYEAAESLNYAMSYPGLTDQIVARLQAEGVAAQPEHVLVGYGSGQILALLPEIFVEPGDI
HHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCHHHHCCCCCE
VIIEAPSFLGAVRRFVQSGARLISIPVDEEGMNVEMLADTLRDLAANGQRPKFIYTIPTF
EEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
HNPTGVTMTLPRRRQLVDLAAEYGVPVVEDDAYIDLRFAGEPLPSLAALDQDGWVIRVGT
CCCCCEEEECCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCHHHHCCCCCCEEEECC
YSKILAPGLRIGWVHARREIIDRLLMVKAEGTTGPFITRLVARFCADGRLERHIATLRQH
HHHHHCCCCEEEHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
YAVKCATMAAAIRRHFPAEASFVMPAGGFFIWVQLPKGVSARALLEASRARGAEFLAGTA
HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCHHHCCHH
CFVERERGDNAMRLAFSFQSSERIEEAIAIIGSAFADL
HEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSTTDRLEALFASRVRDVVPPLFGAAGEPVRPLISLSYGLADPILFPRAELMAAAAEVL
CCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AYEAAESLNYAMSYPGLTDQIVARLQAEGVAAQPEHVLVGYGSGQILALLPEIFVEPGDI
HHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCHHHHCCCCCE
VIIEAPSFLGAVRRFVQSGARLISIPVDEEGMNVEMLADTLRDLAANGQRPKFIYTIPTF
EEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
HNPTGVTMTLPRRRQLVDLAAEYGVPVVEDDAYIDLRFAGEPLPSLAALDQDGWVIRVGT
CCCCCEEEECCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCHHHHCCCCCCEEEECC
YSKILAPGLRIGWVHARREIIDRLLMVKAEGTTGPFITRLVARFCADGRLERHIATLRQH
HHHHHCCCCEEEHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
YAVKCATMAAAIRRHFPAEASFVMPAGGFFIWVQLPKGVSARALLEASRARGAEFLAGTA
HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCHHHCCHH
CFVERERGDNAMRLAFSFQSSERIEEAIAIIGSAFADL
HEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]