| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222526185
Identifier: 222526185
GI number: 222526185
Start: 3636194
End: 3637726
Strand: Direct
Name: 222526185
Synonym: Chy400_2944
Alternate gene names: NA
Gene position: 3636194-3637726 (Clockwise)
Preceding gene: 222526178
Following gene: 222526186
Centisome position: 69.01
GC content: 53.69
Gene sequence:
>1533_bases GTGACAGAGCTACTCTGGGCCGTCGTCGCCCTGCTGGCAGGGCTGGCTGGCGGTGCAGGCATAGGTGTCTGGTGGGCGAA CAATGGCGTCAGCTCACTGGTCCAACGTAAAGCTGCCGAAGCCCGCCTGTTAATTGAAGAGGCGCGTTCGCAGCAAAAAG AAATCCTCTTGCAAGCAAAAGATGAAGCGTTACGGATTCGAAACGAAGCTGAAGCCGAGTTACGTGAATCGCGCCAGAGC TTGCAAAAACAGGAAGAACGTCTGCAACGTAAAGAGGAAAATATCGATCGTAAATTAGAAGGGATCGAGCGTCGTGAGCG GCTGATCCAGCAGCGCGAGCGTCAGATTGAACAGTTGACGCAAGAAGCTGAACGGTTAAAGCGCCAACAGGCGCAAGAGC TAGAGCGAATTTCGCAGTTATCGCGTGAAGAAGCGCGCTCAATTATTCTGGCCGAAGTTGAGCGTGAAACACGTGAAGAT GCAGCCCGGCGCATCCGTGAACTCGAACAGCAAACGAAAGAGGAGGCCGATAAAATTGCCCGTAAAATTATCGGTCTGGC CATTCAGCGCTGCGCGAGTGATTACGTTGCAGAAATGACCGTCTCAACGGTGAACCTGCCGAGTGAAGAACTGAAAGGGC GCATCATTGGTCGTGAAGGACGCAATATTCGCGCCTTCGAGCAGATCACCGGTGTTGATATTATTGTTGATGATACCCCT GAAGCGGTGACTCTCTCGTGCCACGATCCGGTACGTCGGGAAGTAGCACGAGTGGCGCTGTTGAAGTTGTTGAAGGATGG CCGGATCCATCCTTCCCGTATCGAGGAGGTGGTTCACAAGACACAACTCGAGATCGAGCAGATTATGCGCGAAGAAGGTG AGCGTGTCGCTTACGAAGCGAATGTGCAGGGGTTGCACCCCGATCTGATTAAGCTGCTCGGTCGTTTGAAATATCGCACC AGTTATGGGCAAAATGTTTTGCAACATTCGCTAGAATGTGCCTTACTGGCAGCCCATATGGCTGCTGAATTGGGTGCCAA TGTCAATATTGCCAAGACCGCTGCGTTGTTGCACGACATCGGTAAAGCGGTTGATCACGAGGTTCAGGGTCCGCACGCTC TGATTGGTGCCGAAATTGCCCGGCGTCTTGGGCGGTCGGCGGCAATCGTGCACGCCATCGCAGCACATCACTACGATGAA GAACCGCAAACCGTCGAAGCCTTTCTTGTGATTGCCGCTGATGCAATTTCTGGTGCCCGTCCTGGTGCACGTCGCGAAAC GCTTGATCTGTACATCAAGCGGCTGGAGGCTCTCGAAACCGTTGCTACATCATTCCCCGGCGTCCAGCGTGCGTTTGCTG TGCAGGCCGGTCGTGAGGTGCGGGTGATGGTGCAACCCGATCAAATTGACGATCTGGCCAGTATCCATCTGGCTCGCAAT GTGGCTAAGAAGATCGAAGAGAGTCTGCAATATCCTGGTCAGATCAAAGTGACGATTATCCGCGAAACCCGCGCCGTTGA TTATGCACGGTGA
Upstream 100 bases:
>100_bases TGTATGGATTGAAAATCCACAGTTACAATATCTATCTGCATATCGTCGGTCATACTTCCATCCGGCGTCGTGCACATTAA CAACTGCATAGGAGGCTACC
Downstream 100 bases:
>100_bases TGTTTGGCCAGATACACCCAAATTTGGTGATATTTTGGTCTACACATCACGATAACGTGTGGTACAATTACAACACGCTT TCGATCGTCGGCTATAGGGT
Product: phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MTELLWAVVALLAGLAGGAGIGVWWANNGVSSLVQRKAAEARLLIEEARSQQKEILLQAKDEALRIRNEAEAELRESRQS LQKQEERLQRKEENIDRKLEGIERRERLIQQRERQIEQLTQEAERLKRQQAQELERISQLSREEARSIILAEVERETRED AARRIRELEQQTKEEADKIARKIIGLAIQRCASDYVAEMTVSTVNLPSEELKGRIIGREGRNIRAFEQITGVDIIVDDTP EAVTLSCHDPVRREVARVALLKLLKDGRIHPSRIEEVVHKTQLEIEQIMREEGERVAYEANVQGLHPDLIKLLGRLKYRT SYGQNVLQHSLECALLAAHMAAELGANVNIAKTAALLHDIGKAVDHEVQGPHALIGAEIARRLGRSAAIVHAIAAHHYDE EPQTVEAFLVIAADAISGARPGARRETLDLYIKRLEALETVATSFPGVQRAFAVQAGREVRVMVQPDQIDDLASIHLARN VAKKIEESLQYPGQIKVTIIRETRAVDYAR
Sequences:
>Translated_510_residues MTELLWAVVALLAGLAGGAGIGVWWANNGVSSLVQRKAAEARLLIEEARSQQKEILLQAKDEALRIRNEAEAELRESRQS LQKQEERLQRKEENIDRKLEGIERRERLIQQRERQIEQLTQEAERLKRQQAQELERISQLSREEARSIILAEVERETRED AARRIRELEQQTKEEADKIARKIIGLAIQRCASDYVAEMTVSTVNLPSEELKGRIIGREGRNIRAFEQITGVDIIVDDTP EAVTLSCHDPVRREVARVALLKLLKDGRIHPSRIEEVVHKTQLEIEQIMREEGERVAYEANVQGLHPDLIKLLGRLKYRT SYGQNVLQHSLECALLAAHMAAELGANVNIAKTAALLHDIGKAVDHEVQGPHALIGAEIARRLGRSAAIVHAIAAHHYDE EPQTVEAFLVIAADAISGARPGARRETLDLYIKRLEALETVATSFPGVQRAFAVQAGREVRVMVQPDQIDDLASIHLARN VAKKIEESLQYPGQIKVTIIRETRAVDYAR >Mature_509_residues TELLWAVVALLAGLAGGAGIGVWWANNGVSSLVQRKAAEARLLIEEARSQQKEILLQAKDEALRIRNEAEAELRESRQSL QKQEERLQRKEENIDRKLEGIERRERLIQQRERQIEQLTQEAERLKRQQAQELERISQLSREEARSIILAEVERETREDA ARRIRELEQQTKEEADKIARKIIGLAIQRCASDYVAEMTVSTVNLPSEELKGRIIGREGRNIRAFEQITGVDIIVDDTPE AVTLSCHDPVRREVARVALLKLLKDGRIHPSRIEEVVHKTQLEIEQIMREEGERVAYEANVQGLHPDLIKLLGRLKYRTS YGQNVLQHSLECALLAAHMAAELGANVNIAKTAALLHDIGKAVDHEVQGPHALIGAEIARRLGRSAAIVHAIAAHHYDEE PQTVEAFLVIAADAISGARPGARRETLDLYIKRLEALETVATSFPGVQRAFAVQAGREVRVMVQPDQIDDLASIHLARNV AKKIEESLQYPGQIKVTIIRETRAVDYAR
Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]
COG id: COG1418
COG function: function code R; Predicted HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017705 - InterPro: IPR022711 - InterPro: IPR004087 - InterPro: IPR004088 - InterPro: IPR018111 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]
EC number: =3.1.4.16 [H]
Molecular weight: Translated: 57402; Mature: 57271
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS50084 KH_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELLWAVVALLAGLAGGAGIGVWWANNGVSSLVQRKAAEARLLIEEARSQQKEILLQAK CHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DEALRIRNEAEAELRESRQSLQKQEERLQRKEENIDRKLEGIERRERLIQQRERQIEQLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QEAERLKRQQAQELERISQLSREEARSIILAEVERETREDAARRIRELEQQTKEEADKIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKIIGLAIQRCASDYVAEMTVSTVNLPSEELKGRIIGREGRNIRAFEQITGVDIIVDDTP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCCHHHHHHCCCEEEEECCC EAVTLSCHDPVRREVARVALLKLLKDGRIHPSRIEEVVHKTQLEIEQIMREEGERVAYEA CEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC NVQGLHPDLIKLLGRLKYRTSYGQNVLQHSLECALLAAHMAAELGANVNIAKTAALLHDI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GKAVDHEVQGPHALIGAEIARRLGRSAAIVHAIAAHHYDEEPQTVEAFLVIAADAISGAR HHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC PGARRETLDLYIKRLEALETVATSFPGVQRAFAVQAGREVRVMVQPDQIDDLASIHLARN CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH VAKKIEESLQYPGQIKVTIIRETRAVDYAR HHHHHHHHHCCCCCEEEEEEECCCCCCCCC >Mature Secondary Structure TELLWAVVALLAGLAGGAGIGVWWANNGVSSLVQRKAAEARLLIEEARSQQKEILLQAK HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DEALRIRNEAEAELRESRQSLQKQEERLQRKEENIDRKLEGIERRERLIQQRERQIEQLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QEAERLKRQQAQELERISQLSREEARSIILAEVERETREDAARRIRELEQQTKEEADKIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKIIGLAIQRCASDYVAEMTVSTVNLPSEELKGRIIGREGRNIRAFEQITGVDIIVDDTP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCCHHHHHHCCCEEEEECCC EAVTLSCHDPVRREVARVALLKLLKDGRIHPSRIEEVVHKTQLEIEQIMREEGERVAYEA CEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC NVQGLHPDLIKLLGRLKYRTSYGQNVLQHSLECALLAAHMAAELGANVNIAKTAALLHDI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GKAVDHEVQGPHALIGAEIARRLGRSAAIVHAIAAHHYDEEPQTVEAFLVIAADAISGAR HHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC PGARRETLDLYIKRLEALETVATSFPGVQRAFAVQAGREVRVMVQPDQIDDLASIHLARN CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH VAKKIEESLQYPGQIKVTIIRETRAVDYAR HHHHHHHHHCCCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA