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The map label for this gene is araQ [H]

Identifier: 222526136

GI number: 222526136

Start: 3577283

End: 3578122

Strand: Direct

Name: araQ [H]

Synonym: Chy400_2893

Alternate gene names: 222526136

Gene position: 3577283-3578122 (Clockwise)

Preceding gene: 222526135

Following gene: 222526137

Centisome position: 67.89

GC content: 54.05

Gene sequence:

>840_bases
ATGGCAAGTGCAATCTTACGCCGACCATGGGAGCGATTGCTGGCGTATCTGGTGCTGAGCGTCACAGGCTTCATCATGGT
CTTTCCGTTTATCTATATGGTATTATCCTCGCTGAAACCGTCAACGGAAGTGGTACAGGTACCACCAACCCTGTGGCCGA
GCGAGATACGCTGGTCGAACTATCTGGAGGTGTTGAGTATCGTGCCTCTGGGCACGCAGTTGATCAACACCATTATCGTG
ACGGTGTTGGTCGTTTTGGGGTGGGTGTTTACTTCGGTGCTGGCCGGTTATGCTTTTGCCCGCCTCGATTTTCCCGGTCG
CGAATGGCTGTTTGGCGCGTACCTGGCGACGTTGATGGTGCCGTTTGCAGTGCTGATTGTGCCAATGTACCGTCTGATGC
TGGTCTTTGGCTGGGTTGATCGCCTGGAAGCGCTAATCATCCCGTGGTTGTTTACCGCTTACGGAACATTCCTGCTCCGT
CAGTTTTTCATGAGTGTACCGAAAGACCTGGAAGATGCAGCGTTAATTGATGGTGCTTCGCACTGGGGTATTCTCTTTCG
TATCTTTTTGCCGCTGGCCCGCCCTGCCATCGCCACGCTGGCGACGTTTGCCTTTCTTTACGCCTGGAATAGTTTTCTCT
GGCCGCTGATTATCATTAGCAGTCCGGATCGTAAAGTCGTAACGCAGGGGTTGGTCGATCTCCAGGCCCTCTATGCCGCG
CGAGTTGATCTGATCATGGCCGGTTCCACCCTCGCTGTTCTACCGACCCTGATCGTCTTCCTGTTTGCCCAGCGTTATTT
CATCGAGGGTATTGCAACCTCTGGCCTGGCCGGGCGCTAA

Upstream 100 bases:

>100_bases
TGCGCTGGCCTGGTTGTTGTTCGTTATCATTTTGCTGTTGACTCTGATCCAGTTTCGGATTTCACGGCGCTGGGTTCATT
ACGAATAAGCGAGGCCGGAC

Downstream 100 bases:

>100_bases
GCAAGCGAGATGTGCATGGAACAGCAAGAACTCTTTCTGCGACCGCACCGCCGCCTGAATCGGCTGACCGGCGAATGGGT
GCTGGTGTCGCCGCATCGTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MASAILRRPWERLLAYLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSNYLEVLSIVPLGTQLINTIIV
TVLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMVPFAVLIVPMYRLMLVFGWVDRLEALIIPWLFTAYGTFLLR
QFFMSVPKDLEDAALIDGASHWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYAA
RVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAGR

Sequences:

>Translated_279_residues
MASAILRRPWERLLAYLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSNYLEVLSIVPLGTQLINTIIV
TVLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMVPFAVLIVPMYRLMLVFGWVDRLEALIIPWLFTAYGTFLLR
QFFMSVPKDLEDAALIDGASHWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYAA
RVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAGR
>Mature_278_residues
ASAILRRPWERLLAYLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSNYLEVLSIVPLGTQLINTIIVT
VLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMVPFAVLIVPMYRLMLVFGWVDRLEALIIPWLFTAYGTFLLRQ
FFMSVPKDLEDAALIDGASHWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYAAR
VDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAGR

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=283, Percent_Identity=29.6819787985866, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789860, Length=278, Percent_Identity=28.7769784172662, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790464, Length=273, Percent_Identity=24.1758241758242, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31348; Mature: 31217

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAILRRPWERLLAYLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSN
CCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHH
YLEVLSIVPLGTQLINTIIVTVLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
PFAVLIVPMYRLMLVFGWVDRLEALIIPWLFTAYGTFLLRQFFMSVPKDLEDAALIDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH
HWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
RVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAGR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASAILRRPWERLLAYLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSN
CCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHH
YLEVLSIVPLGTQLINTIIVTVLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
PFAVLIVPMYRLMLVFGWVDRLEALIIPWLFTAYGTFLLRQFFMSVPKDLEDAALIDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH
HWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
RVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAGR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]