| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is murE [H]
Identifier: 222525769
GI number: 222525769
Start: 3169651
End: 3171180
Strand: Reverse
Name: murE [H]
Synonym: Chy400_2522
Alternate gene names: 222525769
Gene position: 3171180-3169651 (Counterclockwise)
Preceding gene: 222525770
Following gene: 222525768
Centisome position: 60.19
GC content: 59.61
Gene sequence:
>1530_bases ATGACGGCAAAAACACTTGCCAGTCTCCTGAACAATGTAGCTGTCCAACGGCTAATTGGCGAACCACTCGTGCCTGTGCA ATCGCTCACCTACGACTCGCGGCGTGTTGAGCCGGGGAGTCTGTTTGTTGCCATCCGTGGGCAGCACAGTGATGGTCACC AGTTTATTGACCAGGCTATCGCACGGGGAGCTGTGGCCGTGGTGGTCGATCAACGGTATTGGGATGAACGACCGGTTGCC GTGCCGGTAGTGGTGGTCGCCGATAGCCGGGTGGCCCTGGCACCACTGGCGGCTGCGTTCTACGACTATCCCGGACGTGA ATTGACCACAATCGGGATTACCGGTACCAAAGGAAAAAGCACAACGACCGATGTGACGGCCCAGCTCCTCGCTGCTACCG GACGTATGGTGGGCATGATCAGCACCGTCGATTTTCAGATTGGGAATCGCCGCTGGCCTAACGATACCCGTCAGAGCACA CCGGAAGCACCAGAGGTGCAGGCATTGCTGCGCGAGATGGTCACTGCCGGTTGCGATACAGCCGTTATTGAAGCGACATC CCACGCTCTCTCGCCACGCTGGGGGCGGCTGGTTGGCTGTGCGTTCGCTGTGGCTGTAATGCTTAATATCGGCCACGAAC ATCTCGATTACCACGGCACATTCGAGCAGTATCGGGCCGACAAAGCCCAGCTCTTTGCGCTACTTGGCGAACGCAGTGGT TCGCGCTGGGCAATTGTCAATGCTGACGATCCAAATCATGCGTATTTCCTTGATGCTGCACCTGCCGATGCGGTGCGGCT ACGGTATGGTTTACACGAGCCGGCAGATGTCCAGGGACAGATACTCCACAGTGGGCCGATGAGCAGTGTGGTGCGGGTAA CGTCACCCTGGGGCACCACCGATCTGACCGTTCCGCTACCGGGGCGATTCAACGCCAGTAATGCGCTGGCCGCGCTGACA GTCGCTCTCAGTCAGGGCGTTGCGCTCGAGGCAGCCGCTGCCGCCCTGGCCGGCGTGCGGGCACCACGTGGCCGGATGGT GCCAATTGATGCCGGGCAACCATTCGCGGTGATTGTAGACTATGCTCATAATCCCGATTCGTTCGAGCAGATCTTTGCCA TGCTGCGGCCCCAGGTGCAGGGGCGAATGATCGCGGTTTTCGGCAGTGCCGGCGAGCGTGATGTTGCCAAACGGGCTATT CAGGGAGAAATTGCCGGTCGGATGTGTGACTTGCTGGTGCTGACCGATGAAGATCCACGTGGCGAGGATCGCGAGGCAAT CATTGCCCAGATCGCTGCCGGTGCCGAACGGGCCGGCAAACGACCCGGTAGTGGGTACCTCTGTATTCCTGATCGGGCAC AGGCCATTCGGGCTGCCATGGCCGCCGCACAACCCGGTGACCTGGTGTTGTTGCTGGGCAAAGGACATGAGGGTAGCATT ATCTACGCCGACTTTTCACTGCCGTGGAACGAAGAGCGCGAAGCCCGGCAGGCACTGGCCGAGTTAGGATACCATCGGTC GCATGATTGA
Upstream 100 bases:
>100_bases GTTTTGGTGGTCGAATCGTTCGTTTTATGCCGGCTTTCGATCTGGTCCTGTTGCCATTACTCTATCCATTGGCGCGACGA AAGATTGGAGGATAACGTCA
Downstream 100 bases:
>100_bases ACTGGCACCACACAATCCGTATGGCCTGACGATTGCTTCACCGGTCATTGCGGCTGCCGGCAGCCTGGGTGACGTGGTCG GTGTAGCGCGCTGGTTAGGG
Product: UDP-N-acetylmuramyl-tripeptide synthetase
Products: ADP; phosphate; UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diamino-; $heptanedioate
Alternate protein names: UDP-MurNAc-tripeptide synthetase [H]
Number of amino acids: Translated: 509; Mature: 508
Protein sequence:
>509_residues MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVA VPVVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQST PEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSG SRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTTDLTVPLPGRFNASNALAALT VALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAI QGEIAGRMCDLLVLTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLGKGHEGSI IYADFSLPWNEEREARQALAELGYHRSHD
Sequences:
>Translated_509_residues MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVA VPVVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQST PEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSG SRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTTDLTVPLPGRFNASNALAALT VALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAI QGEIAGRMCDLLVLTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLGKGHEGSI IYADFSLPWNEEREARQALAELGYHRSHD >Mature_508_residues TAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVAV PVVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTP EAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGS RWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTTDLTVPLPGRFNASNALAALTV ALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQ GEIAGRMCDLLVLTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLGKGHEGSII YADFSLPWNEEREARQALAELGYHRSHD
Specific function: Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan [H]
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family. MurE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786273, Length=487, Percent_Identity=33.0595482546201, Blast_Score=201, Evalue=8e-53, Organism=Escherichia coli, GI1786274, Length=347, Percent_Identity=28.5302593659942, Blast_Score=100, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005761 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.13
Molecular weight: Translated: 54584; Mature: 54452
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS01011 FOLYLPOLYGLU_SYNT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAI CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH ARGAVAVVVDQRYWDERPVAVPVVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKS HCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCC TTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGCDT CHHHHHHHHHHHCCHHEEEEEEEEEEECCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCC AVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSG EEEEHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHCHHHHHHHHHHCCCC SRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTT CEEEEEECCCCCCEEEEECCCCCHHHHEECCCCCCCCCCEEEECCCCCCEEEEECCCCCC DLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVD EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEE YAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLVLTDEDPR CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCC GEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLGKGHEGSI CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCE IYADFSLPWNEEREARQALAELGYHRSHD EEEEECCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAI CHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH ARGAVAVVVDQRYWDERPVAVPVVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKS HCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCC TTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGCDT CHHHHHHHHHHHCCHHEEEEEEEEEEECCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCC AVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSG EEEEHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHCHHHHHHHHHHCCCC SRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTT CEEEEEECCCCCCEEEEECCCCCHHHHEECCCCCCCCCCEEEECCCCCCEEEEECCCCCC DLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVD EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEE YAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLVLTDEDPR CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCC GEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLGKGHEGSI CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCE IYADFSLPWNEEREARQALAELGYHRSHD EEEEECCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.04 {meso-2,6-diaminoheptanedioate}} 0.036 {meso-2,6-diaminoheptanedioate}} 1.5 {meso-lanthionine}} 10 {D-allo-cystathionine}} 3.9 {L-allo-cystathionine}} 0.62 {ATP}} 0.076 {UDP-N-MurNAc-L-Ala-D-Glu}} 0.035 {UDP-N-MurNAc-L-Ala-D-Glu}} 0.
Substrates: ATP; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate; meso-2,6-diaminoheptanedioate
Specific reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + meso-2,6-diaminoheptanedioate = ADP + phosphate + UDP-N- $acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diamino- $heptanedioate
General reaction: Carboxamide formation; Carboxylic acid amide formation [C]
Inhibitor: MurNAc (alpha-methyl)-L-Ala-D-Glu; MurNAc (beta-methyl)-L-Ala-D-Glu; N alpha-Propionyl -L-Ala-2-amino-6-phosphonohexanoate [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA