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The map label for this gene is lsrD [H]

Identifier: 222525713

GI number: 222525713

Start: 3110134

End: 3111147

Strand: Reverse

Name: lsrD [H]

Synonym: Chy400_2464

Alternate gene names: 222525713

Gene position: 3111147-3110134 (Counterclockwise)

Preceding gene: 222525714

Following gene: 222525712

Centisome position: 59.05

GC content: 55.62

Gene sequence:

>1014_bases
ATGAACGCTAAACTGCGTCGCCTGCTGAGTTGGGAGGGGTTGTTACTGGCAGTTTTGCTGCTGGTTGCAATCATCAACAC
CAATCTGGCTCCGGCGTATGTAAGCCTGAATAATCAGATTAATCTCTTTCAATTGTCAATCGAGAAGATTATTGTGGCGC
TGGTGATGACCTTCATCATCATCAATGGTGAGATCGATCTGTCAGTGGCGTCGGTGATGGGGTTGGCTGCCTGTATCGTG
GCTGTTCTCTTCGAGCAAGGCATACCGATGGAGCTGGCGATTGTGGTGGCGCTGCTGGCCGGTGCGTTGTGTGGCGCATT
CAACGGTTTCTGGGTCGCCTATGTCGGGCTACCGTCGCTGGCAGTGACCCTGGCCGGTATGATCGGGTTTCGTGGCGTGG
CCCGGATTCTGATCGAGGATCGTTCGATTGGAGGTTTTCCAGCCTGGTTTACTGCGCTTGGACAGCAACCACTGATCGGC
CCATTCCCTTTCAGTCTGATCGTCTTTGGCTGTCTGTTCGCGATTGCCTTCGTCGTTCTGCAATACTCCGGCGTTGGTCG
TCTGGTCTACGTGGTGGGCCATAACGCGGCGGTTGCCCGCTATTCCGGCATCGATGTTGCCCGGCTGAAGCTCGGTCTCT
TTGTCGCCTCTGGTCTGATTGCGGCGCTGGCCGGTATTTTGCTGGCAGCCCGGCTGGGTGCTGTGCGAGGGAATACCGCC
GATGGGTTTGAGCTGGATATTATCACGATGGTGCTCCTCGGCGGCGTAAGCATCTTTGGCGGGGTCGGCAATCTGGTTGG
CGTCGGACTTTCGATCCTCGTTATCCTCAATCTGCGCAACGGGATGTCGTTGCTCAATGTAACGGGCAACGTGCAAACCG
GTGTTGTGGGCTTGTTGTTGATCCTCTCGGTGTTGTTGCCTAATCTGGCTCAGATTGTGCGTGAACGCTGGCAACGACGC
ATTGTACAGCGAAAGGAGGTGCCTGCCGAAATCGAGACCAGTGTTTCGTCGTAG

Upstream 100 bases:

>100_bases
TTGGGATTGTTGATCCTGCTGGCAGTTGCTTCAGACTCGGTCATTTTAGGCTGGCTACGCCGTTTGTGGGCAGCGCCGGC
CTTGCGTGCGGAGGTCGGCC

Downstream 100 bases:

>100_bases
ATGACAGGTATCGAACAGTGGTGTTCAATCGTTGCTCGTGGTTAGAGGAGTGTGTCTATGAAGTTGACAAAATCCCATCT
CTTTCCGGTTGTTCTGCTGA

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNAKLRRLLSWEGLLLAVLLLVAIINTNLAPAYVSLNNQINLFQLSIEKIIVALVMTFIIINGEIDLSVASVMGLAACIV
AVLFEQGIPMELAIVVALLAGALCGAFNGFWVAYVGLPSLAVTLAGMIGFRGVARILIEDRSIGGFPAWFTALGQQPLIG
PFPFSLIVFGCLFAIAFVVLQYSGVGRLVYVVGHNAAVARYSGIDVARLKLGLFVASGLIAALAGILLAARLGAVRGNTA
DGFELDIITMVLLGGVSIFGGVGNLVGVGLSILVILNLRNGMSLLNVTGNVQTGVVGLLLILSVLLPNLAQIVRERWQRR
IVQRKEVPAEIETSVSS

Sequences:

>Translated_337_residues
MNAKLRRLLSWEGLLLAVLLLVAIINTNLAPAYVSLNNQINLFQLSIEKIIVALVMTFIIINGEIDLSVASVMGLAACIV
AVLFEQGIPMELAIVVALLAGALCGAFNGFWVAYVGLPSLAVTLAGMIGFRGVARILIEDRSIGGFPAWFTALGQQPLIG
PFPFSLIVFGCLFAIAFVVLQYSGVGRLVYVVGHNAAVARYSGIDVARLKLGLFVASGLIAALAGILLAARLGAVRGNTA
DGFELDIITMVLLGGVSIFGGVGNLVGVGLSILVILNLRNGMSLLNVTGNVQTGVVGLLLILSVLLPNLAQIVRERWQRR
IVQRKEVPAEIETSVSS
>Mature_337_residues
MNAKLRRLLSWEGLLLAVLLLVAIINTNLAPAYVSLNNQINLFQLSIEKIIVALVMTFIIINGEIDLSVASVMGLAACIV
AVLFEQGIPMELAIVVALLAGALCGAFNGFWVAYVGLPSLAVTLAGMIGFRGVARILIEDRSIGGFPAWFTALGQQPLIG
PFPFSLIVFGCLFAIAFVVLQYSGVGRLVYVVGHNAAVARYSGIDVARLKLGLFVASGLIAALAGILLAARLGAVRGNTA
DGFELDIITMVLLGGVSIFGGVGNLVGVGLSILVILNLRNGMSLLNVTGNVQTGVVGLLLILSVLLPNLAQIVRERWQRR
IVQRKEVPAEIETSVSS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=321, Percent_Identity=34.2679127725857, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=34.8684210526316, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787794, Length=337, Percent_Identity=32.6409495548961, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693152, Length=266, Percent_Identity=36.8421052631579, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789992, Length=344, Percent_Identity=31.9767441860465, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790524, Length=308, Percent_Identity=34.4155844155844, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082395, Length=316, Percent_Identity=27.2151898734177, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788471, Length=263, Percent_Identity=29.6577946768061, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=28.7671232876712, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=30.1204819277108, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35528; Mature: 35528

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKLRRLLSWEGLLLAVLLLVAIINTNLAPAYVSLNNQINLFQLSIEKIIVALVMTFII
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHH
INGEIDLSVASVMGLAACIVAVLFEQGIPMELAIVVALLAGALCGAFNGFWVAYVGLPSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
AVTLAGMIGFRGVARILIEDRSIGGFPAWFTALGQQPLIGPFPFSLIVFGCLFAIAFVVL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QYSGVGRLVYVVGHNAAVARYSGIDVARLKLGLFVASGLIAALAGILLAARLGAVRGNTA
HHCCCCEEEEEEECCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGFELDIITMVLLGGVSIFGGVGNLVGVGLSILVILNLRNGMSLLNVTGNVQTGVVGLLL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
ILSVLLPNLAQIVRERWQRRIVQRKEVPAEIETSVSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MNAKLRRLLSWEGLLLAVLLLVAIINTNLAPAYVSLNNQINLFQLSIEKIIVALVMTFII
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHH
INGEIDLSVASVMGLAACIVAVLFEQGIPMELAIVVALLAGALCGAFNGFWVAYVGLPSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
AVTLAGMIGFRGVARILIEDRSIGGFPAWFTALGQQPLIGPFPFSLIVFGCLFAIAFVVL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QYSGVGRLVYVVGHNAAVARYSGIDVARLKLGLFVASGLIAALAGILLAARLGAVRGNTA
HHCCCCEEEEEEECCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGFELDIITMVLLGGVSIFGGVGNLVGVGLSILVILNLRNGMSLLNVTGNVQTGVVGLLL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
ILSVLLPNLAQIVRERWQRRIVQRKEVPAEIETSVSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA