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The map label for this gene is lsrC [H]

Identifier: 222525714

GI number: 222525714

Start: 3111137

End: 3112168

Strand: Reverse

Name: lsrC [H]

Synonym: Chy400_2465

Alternate gene names: 222525714

Gene position: 3112168-3111137 (Counterclockwise)

Preceding gene: 222525715

Following gene: 222525713

Centisome position: 59.07

GC content: 57.17

Gene sequence:

>1032_bases
ATGAATACGTGGCGACAGCGGATTCGGCCAGAGCAGATCCGCGAGTTGAGTTTGATCGGGTTAATCGTCATTGCGCTGTT
GATTTTTGGCTGGCAGATCGAAAATTTCCTCTCGGCGCGCACGTTTAACCGCATTACGTCGAGTGTGGCGATTGTCGGTA
TGGTAGCCATCGGGCAGACGCTCGTGGTGCTGACCCGCAATATCGATCTGTCAGTAGGTTCTATCGTTGGCTTTACCGCC
TATTTTGTCGGTGCGCAACTGGCCGCGAATAACGGCTTACCGCCGCTCGTTGCGGTAGGGCTGGCCCTGCTGGTGGGCGG
TACGATGGGTCTGATCAATGGTCTGATTGTGGCCTATGGCCGGGTGCCGGCGATTATTACAACCCTGGGGACGCTGGCAA
TCTACCGGATGTTGCTGATTAATTACGCGAATGCACGCACGATTACTGTCGACTCGCTGCCGTCGTGGGTGGTTGAGTTG
AGCAGACAGAATCTCTTCTCTATCGGTGATTTTGCCGTTCGACCACTGTTTGCGATTACGGTTGTTGCCGTGGTGGTGTT
TCAGTTGGTGTTGGGCTACACCATCTTCGGTCGGCGATTGTACGCGATTGGTTCCAATCCCGAAGCAGCACGTTTTGCCG
GTTTGCCGGCTCAGCGTATGGTGCTGGCAGCGTTTGTGCTCTGCGGCATGCTCGCCGGGTTGGCCGGGTTCCTGTTTCTG
GCCCGCTTTGGCAATATCACGGCGGTTGCCGGGCAGGGCATCGAACTCGAGTCGGTGGCGGCAGTGGTTGTTGGTGGTGT
GAACACGTTTGGCGGATCGGGAACGGTGCTGGGTGCGCTATTGGGTGCTTTCCTCATCGACTTGCTCGGCCAGGGGCTGT
TGCGCTGGCTCGGTATCAGTGAGTTCTGGCGTGATGCTCTCTTGGGATTGTTGATCCTGCTGGCAGTTGCTTCAGACTCG
GTCATTTTAGGCTGGCTACGCCGTTTGTGGGCAGCGCCGGCCTTGCGTGCGGAGGTCGGCCATGAACGCTAA

Upstream 100 bases:

>100_bases
GTATGACGGGATGCCGGTCGGGTGATTCCCTAGAGAACGGCATGGAACAGTTGATCACGCGCTGAGGAAGATTACCGGTA
GGTCAGGTAGGGAGCACACC

Downstream 100 bases:

>100_bases
ACTGCGTCGCCTGCTGAGTTGGGAGGGGTTGTTACTGGCAGTTTTGCTGCTGGTTGCAATCATCAACACCAATCTGGCTC
CGGCGTATGTAAGCCTGAAT

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNTWRQRIRPEQIRELSLIGLIVIALLIFGWQIENFLSARTFNRITSSVAIVGMVAIGQTLVVLTRNIDLSVGSIVGFTA
YFVGAQLAANNGLPPLVAVGLALLVGGTMGLINGLIVAYGRVPAIITTLGTLAIYRMLLINYANARTITVDSLPSWVVEL
SRQNLFSIGDFAVRPLFAITVVAVVVFQLVLGYTIFGRRLYAIGSNPEAARFAGLPAQRMVLAAFVLCGMLAGLAGFLFL
ARFGNITAVAGQGIELESVAAVVVGGVNTFGGSGTVLGALLGAFLIDLLGQGLLRWLGISEFWRDALLGLLILLAVASDS
VILGWLRRLWAAPALRAEVGHER

Sequences:

>Translated_343_residues
MNTWRQRIRPEQIRELSLIGLIVIALLIFGWQIENFLSARTFNRITSSVAIVGMVAIGQTLVVLTRNIDLSVGSIVGFTA
YFVGAQLAANNGLPPLVAVGLALLVGGTMGLINGLIVAYGRVPAIITTLGTLAIYRMLLINYANARTITVDSLPSWVVEL
SRQNLFSIGDFAVRPLFAITVVAVVVFQLVLGYTIFGRRLYAIGSNPEAARFAGLPAQRMVLAAFVLCGMLAGLAGFLFL
ARFGNITAVAGQGIELESVAAVVVGGVNTFGGSGTVLGALLGAFLIDLLGQGLLRWLGISEFWRDALLGLLILLAVASDS
VILGWLRRLWAAPALRAEVGHER
>Mature_343_residues
MNTWRQRIRPEQIRELSLIGLIVIALLIFGWQIENFLSARTFNRITSSVAIVGMVAIGQTLVVLTRNIDLSVGSIVGFTA
YFVGAQLAANNGLPPLVAVGLALLVGGTMGLINGLIVAYGRVPAIITTLGTLAIYRMLLINYANARTITVDSLPSWVVEL
SRQNLFSIGDFAVRPLFAITVVAVVVFQLVLGYTIFGRRLYAIGSNPEAARFAGLPAQRMVLAAFVLCGMLAGLAGFLFL
ARFGNITAVAGQGIELESVAAVVVGGVNTFGGSGTVLGALLGAFLIDLLGQGLLRWLGISEFWRDALLGLLILLAVASDS
VILGWLRRLWAAPALRAEVGHER

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=309, Percent_Identity=35.5987055016181, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789992, Length=358, Percent_Identity=31.5642458100559, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=35.3125, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=31.8611987381703, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082395, Length=329, Percent_Identity=30.6990881458967, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=29.6666666666667, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787794, Length=324, Percent_Identity=30.2469135802469, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=28.8461538461538, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=32.2981366459627, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=30.9803921568627, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36516; Mature: 36516

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTWRQRIRPEQIRELSLIGLIVIALLIFGWQIENFLSARTFNRITSSVAIVGMVAIGQT
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVLTRNIDLSVGSIVGFTAYFVGAQLAANNGLPPLVAVGLALLVGGTMGLINGLIVAYG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
RVPAIITTLGTLAIYRMLLINYANARTITVDSLPSWVVELSRQNLFSIGDFAVRPLFAIT
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAVVVFQLVLGYTIFGRRLYAIGSNPEAARFAGLPAQRMVLAAFVLCGMLAGLAGFLFL
HHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARFGNITAVAGQGIELESVAAVVVGGVNTFGGSGTVLGALLGAFLIDLLGQGLLRWLGIS
HHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHH
EFWRDALLGLLILLAVASDSVILGWLRRLWAAPALRAEVGHER
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure
MNTWRQRIRPEQIRELSLIGLIVIALLIFGWQIENFLSARTFNRITSSVAIVGMVAIGQT
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVLTRNIDLSVGSIVGFTAYFVGAQLAANNGLPPLVAVGLALLVGGTMGLINGLIVAYG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
RVPAIITTLGTLAIYRMLLINYANARTITVDSLPSWVVELSRQNLFSIGDFAVRPLFAIT
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAVVVFQLVLGYTIFGRRLYAIGSNPEAARFAGLPAQRMVLAAFVLCGMLAGLAGFLFL
HHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARFGNITAVAGQGIELESVAAVVVGGVNTFGGSGTVLGALLGAFLIDLLGQGLLRWLGIS
HHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHH
EFWRDALLGLLILLAVASDSVILGWLRRLWAAPALRAEVGHER
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA