| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is yuxG [H]
Identifier: 222525709
GI number: 222525709
Start: 3103776
End: 3105968
Strand: Reverse
Name: yuxG [H]
Synonym: Chy400_2460
Alternate gene names: 222525709
Gene position: 3105968-3103776 (Counterclockwise)
Preceding gene: 222525710
Following gene: 222525708
Centisome position: 58.95
GC content: 57.46
Gene sequence:
>2193_bases ATGAACACAGATAACACTCGGTTTCGCCATGTCAAGTATGGGTGGGATGCAGCCTATGCAGCGACACTCGATCCGGTAGC ACGTCTGGTATACCGCTCGAATCTGTTAGGGAGTGATCAGCGGATTACGAATACCGGCGGCGGAAACACATCGGCTAAGA TCACCGAGCGTGATCCACTCACGGCAGCGCCGGTCGAGGTGTTGTGGGTGAAAGGTTCAGGTGGTGATTTGCGCACCAGC ACCCGCGCCAATTTTGCTTCACTCGAACTACGCAAATTACGCGAATTGCGCACGATGTATCTGCGCGATCCGGCTCGCGG CCCGAAGACTGCCATCGAGGATGCGATGGTTGATCTCTACCCGCACTGCACCTTCAATCTCAACCCACGGGCGTCATCCA TTGATACACCGCTCCATGCGTTCATTCCCTACCGTCACGTCGATCACATGCATCCGAATGCGGTGATCGCCATCGCTGCT TCACGCAACGGCGAGCGATTGACGCGCGAGATTTACGGTGATGAGGTTATCTGGATGCCTTGGCAACGTCCGGGTTTTGA TCTCGGTCTGAAGCTGGAGCAGATTTGTCGTGAGCATCCGCAGGCGAAGGGGGTCATTCTCGGCGGGCACGGATTGATCA ATTGGGCCGATGATGATCAGGAATGCTATGAGCGGACGCTTGATCTGATCGAGCGTGCAGCACGATACATCGAAGCCCAT GATCGTGGCGAGGCAACGTTTGGTGGTGCGCGCTATGATGCACTCCCATTTGAACAACGCCGCTCAGTTCTGGCGGCCAT CTTACCCTGGCTGCGAGGGCAGATCAGCCAGCAACGACGCTTCATCGCCACCATTCAGGACGATGCGACCACGCTCCGCT TTGTCAATAGTGTCGATGCACCTCGCCTGGCCGAATTGGGCACCAGTTGTCCTGATCATTTTCTGCGGACGAAGATTAAG CCGCTTTACATTGACTGGCATCCCCAGGCGGAAACGCTCGACGATTTACAGCGCAAACTGGCCGTAGGACTTGAACGCTA TCGCGCCGATTACACCCACTACTACGAAACCCACCGCCGTCCCGACTCACCACCGATGCGCGATCCGAATCCAAGCGTGA TTCTCATTCCGGGACTGGGGATGATCGCCTGGGGCAAAGACAAGAGCGAGTCGCGGGTGACGGCAGAGTTTTATACGGCA GCGATAGAGGTGATGCGCGGTGCTGAAGCGATTGACGAATACACTGCACTACCGCTACAAGAAGCCTTTGATATCGAGTA CTGGCAGCTTGAAGAGGCCAAACTGCGACGAATGCCGCCGGAGAAGGAGCTGGCCCGTCAGGTGATAGCTGTCGTCGGTG GCGGGAGTGGCATCGGTCGTGAGGTGGCTTTACGGCTGGCTAACGAGGGTGCGCATATCGTTTGTGTGGATAAAGATGGA GCAGCGGCGCAGGCAACGGCACAGGCGATCATTGATCGCCACGGGATGGGCATTGGGGTTGCCGGGAGTGATATTTCGGC TTGCGGCCCGGCAATCGGGCTGGTGGCCGACATCACGGATCGCACCAGTGTGCGGACAATGCTCGAACAAGTTGTACTGG CCTACGGCGGTCTGGACGCCGTAGCGGTGACTGCCGGTATCTTTGTCGCTCCCGATAGCGAAGGCCGCATTCGCGACGAA CAATGGGCATTAACCTTTGCCATCAATGTCACCGGTCACTATCTGGTGGCCGATGAAGCTGCCCGTATCTGGCGTAAACA GGGTTTACCGGCCAACCTCGTCTTGACAACATCGGTGAATGCAGTAGTTGCCAAGAAGGGATCGCTCGCCTACGATACCA GCAAAGCCGCAGCCAATCATCTGATCCGTGAACTGGCTATCGAACTGGCACCGCTGGTGAGGGTCAACGGTGTAGCCCCG GCGACTGTCGTGCAAGGAAGCGGCATGTTTCCGCGTGAGCGGGTGATCGCGTCATTGACCAAATACGGGATTCCGTTCAC TGCCGACGAACCGACCGACGTGCTCACCGACAAACTGGCCCGTTTCTACGCTGAACGCTCACTGCTCAAGCGCCCAATCA CGCCAGCCGACCAGGCCGAAGCCTTTTTCCTGCTCCTGAGCCAGCGGCTGAGTCAGACAACCGGCCAGATCATCACGGTT GACGGCGGACTCCACGAAGCCTTCCTGCGTTGA
Upstream 100 bases:
>100_bases GTTTCTCAACGAGATCCGTCACTATGAAGCAGCAGTCCTGGCGATGCGTAGCTAGTCGTTGCGACAAACAAGGTCTCTTC GTCAGACAGGGAGTTTCCTG
Downstream 100 bases:
>100_bases GGGGGCAACACCATGACAGAACTGGCACATTTTATTGCGATTGACATCGGTGCTTCGAGCGGGCGCGTCATTCTAGGGCG TTGGGACGGCACACGCTTCA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MNTDNTRFRHVKYGWDAAYAATLDPVARLVYRSNLLGSDQRITNTGGGNTSAKITERDPLTAAPVEVLWVKGSGGDLRTS TRANFASLELRKLRELRTMYLRDPARGPKTAIEDAMVDLYPHCTFNLNPRASSIDTPLHAFIPYRHVDHMHPNAVIAIAA SRNGERLTREIYGDEVIWMPWQRPGFDLGLKLEQICREHPQAKGVILGGHGLINWADDDQECYERTLDLIERAARYIEAH DRGEATFGGARYDALPFEQRRSVLAAILPWLRGQISQQRRFIATIQDDATTLRFVNSVDAPRLAELGTSCPDHFLRTKIK PLYIDWHPQAETLDDLQRKLAVGLERYRADYTHYYETHRRPDSPPMRDPNPSVILIPGLGMIAWGKDKSESRVTAEFYTA AIEVMRGAEAIDEYTALPLQEAFDIEYWQLEEAKLRRMPPEKELARQVIAVVGGGSGIGREVALRLANEGAHIVCVDKDG AAAQATAQAIIDRHGMGIGVAGSDISACGPAIGLVADITDRTSVRTMLEQVVLAYGGLDAVAVTAGIFVAPDSEGRIRDE QWALTFAINVTGHYLVADEAARIWRKQGLPANLVLTTSVNAVVAKKGSLAYDTSKAAANHLIRELAIELAPLVRVNGVAP ATVVQGSGMFPRERVIASLTKYGIPFTADEPTDVLTDKLARFYAERSLLKRPITPADQAEAFFLLLSQRLSQTTGQIITV DGGLHEAFLR
Sequences:
>Translated_730_residues MNTDNTRFRHVKYGWDAAYAATLDPVARLVYRSNLLGSDQRITNTGGGNTSAKITERDPLTAAPVEVLWVKGSGGDLRTS TRANFASLELRKLRELRTMYLRDPARGPKTAIEDAMVDLYPHCTFNLNPRASSIDTPLHAFIPYRHVDHMHPNAVIAIAA SRNGERLTREIYGDEVIWMPWQRPGFDLGLKLEQICREHPQAKGVILGGHGLINWADDDQECYERTLDLIERAARYIEAH DRGEATFGGARYDALPFEQRRSVLAAILPWLRGQISQQRRFIATIQDDATTLRFVNSVDAPRLAELGTSCPDHFLRTKIK PLYIDWHPQAETLDDLQRKLAVGLERYRADYTHYYETHRRPDSPPMRDPNPSVILIPGLGMIAWGKDKSESRVTAEFYTA AIEVMRGAEAIDEYTALPLQEAFDIEYWQLEEAKLRRMPPEKELARQVIAVVGGGSGIGREVALRLANEGAHIVCVDKDG AAAQATAQAIIDRHGMGIGVAGSDISACGPAIGLVADITDRTSVRTMLEQVVLAYGGLDAVAVTAGIFVAPDSEGRIRDE QWALTFAINVTGHYLVADEAARIWRKQGLPANLVLTTSVNAVVAKKGSLAYDTSKAAANHLIRELAIELAPLVRVNGVAP ATVVQGSGMFPRERVIASLTKYGIPFTADEPTDVLTDKLARFYAERSLLKRPITPADQAEAFFLLLSQRLSQTTGQIITV DGGLHEAFLR >Mature_730_residues MNTDNTRFRHVKYGWDAAYAATLDPVARLVYRSNLLGSDQRITNTGGGNTSAKITERDPLTAAPVEVLWVKGSGGDLRTS TRANFASLELRKLRELRTMYLRDPARGPKTAIEDAMVDLYPHCTFNLNPRASSIDTPLHAFIPYRHVDHMHPNAVIAIAA SRNGERLTREIYGDEVIWMPWQRPGFDLGLKLEQICREHPQAKGVILGGHGLINWADDDQECYERTLDLIERAARYIEAH DRGEATFGGARYDALPFEQRRSVLAAILPWLRGQISQQRRFIATIQDDATTLRFVNSVDAPRLAELGTSCPDHFLRTKIK PLYIDWHPQAETLDDLQRKLAVGLERYRADYTHYYETHRRPDSPPMRDPNPSVILIPGLGMIAWGKDKSESRVTAEFYTA AIEVMRGAEAIDEYTALPLQEAFDIEYWQLEEAKLRRMPPEKELARQVIAVVGGGSGIGREVALRLANEGAHIVCVDKDG AAAQATAQAIIDRHGMGIGVAGSDISACGPAIGLVADITDRTSVRTMLEQVVLAYGGLDAVAVTAGIFVAPDSEGRIRDE QWALTFAINVTGHYLVADEAARIWRKQGLPANLVLTTSVNAVVAKKGSLAYDTSKAAANHLIRELAIELAPLVRVNGVAP ATVVQGSGMFPRERVIASLTKYGIPFTADEPTDVLTDKLARFYAERSLLKRPITPADQAEAFFLLLSQRLSQTTGQIITV DGGLHEAFLR
Specific function: Unknown
COG id: COG3347
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=279, Percent_Identity=27.9569892473118, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI32483357, Length=281, Percent_Identity=27.4021352313167, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=284, Percent_Identity=29.9295774647887, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1789057, Length=280, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534694, Length=290, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=8e-11, Organism=Drosophila melanogaster, GI21357041, Length=299, Percent_Identity=28.4280936454849, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571526, Length=284, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 - InterPro: IPR013454 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short; PF00596 Aldolase_II [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 80654; Mature: 80654
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTDNTRFRHVKYGWDAAYAATLDPVARLVYRSNLLGSDQRITNTGGGNTSAKITERDPL CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCC TAAPVEVLWVKGSGGDLRTSTRANFASLELRKLRELRTMYLRDPARGPKTAIEDAMVDLY CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC PHCTFNLNPRASSIDTPLHAFIPYRHVDHMHPNAVIAIAASRNGERLTREIYGDEVIWMP CCEEEECCCCCCCCCCCHHHHCCHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCEEEEC WQRPGFDLGLKLEQICREHPQAKGVILGGHGLINWADDDQECYERTLDLIERAARYIEAH CCCCCCCCCCCHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHC DRGEATFGGARYDALPFEQRRSVLAAILPWLRGQISQQRRFIATIQDDATTLRFVNSVDA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCC PRLAELGTSCPDHFLRTKIKPLYIDWHPQAETLDDLQRKLAVGLERYRADYTHYYETHRR CHHHHHCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PDSPPMRDPNPSVILIPGLGMIAWGKDKSESRVTAEFYTAAIEVMRGAEAIDEYTALPLQ CCCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EAFDIEYWQLEEAKLRRMPPEKELARQVIAVVGGGSGIGREVALRLANEGAHIVCVDKDG HHHCCCCEEECHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCEEEEECCCC AAAQATAQAIIDRHGMGIGVAGSDISACGPAIGLVADITDRTSVRTMLEQVVLAYGGLDA CHHHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHEECCCCHHHHHHHHHHHHHHHCCCHH VAVTAGIFVAPDSEGRIRDEQWALTFAINVTGHYLVADEAARIWRKQGLPANLVLTTSVN HHHHCEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEHHHHHHHHHCCCCEEEEEEECCC AVVAKKGSLAYDTSKAAANHLIRELAIELAPLVRVNGVAPATVVQGSGMFPRERVIASLT EEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHHH KYGIPFTADEPTDVLTDKLARFYAERSLLKRPITPADQAEAFFLLLSQRLSQTTGQIITV HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE DGGLHEAFLR ECCHHHHHCC >Mature Secondary Structure MNTDNTRFRHVKYGWDAAYAATLDPVARLVYRSNLLGSDQRITNTGGGNTSAKITERDPL CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCC TAAPVEVLWVKGSGGDLRTSTRANFASLELRKLRELRTMYLRDPARGPKTAIEDAMVDLY CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC PHCTFNLNPRASSIDTPLHAFIPYRHVDHMHPNAVIAIAASRNGERLTREIYGDEVIWMP CCEEEECCCCCCCCCCCHHHHCCHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCEEEEC WQRPGFDLGLKLEQICREHPQAKGVILGGHGLINWADDDQECYERTLDLIERAARYIEAH CCCCCCCCCCCHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHC DRGEATFGGARYDALPFEQRRSVLAAILPWLRGQISQQRRFIATIQDDATTLRFVNSVDA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCC PRLAELGTSCPDHFLRTKIKPLYIDWHPQAETLDDLQRKLAVGLERYRADYTHYYETHRR CHHHHHCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PDSPPMRDPNPSVILIPGLGMIAWGKDKSESRVTAEFYTAAIEVMRGAEAIDEYTALPLQ CCCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EAFDIEYWQLEEAKLRRMPPEKELARQVIAVVGGGSGIGREVALRLANEGAHIVCVDKDG HHHCCCCEEECHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCEEEEECCCC AAAQATAQAIIDRHGMGIGVAGSDISACGPAIGLVADITDRTSVRTMLEQVVLAYGGLDA CHHHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHEECCCCHHHHHHHHHHHHHHHCCCHH VAVTAGIFVAPDSEGRIRDEQWALTFAINVTGHYLVADEAARIWRKQGLPANLVLTTSVN HHHHCEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEHHHHHHHHHCCCCEEEEEEECCC AVVAKKGSLAYDTSKAAANHLIRELAIELAPLVRVNGVAPATVVQGSGMFPRERVIASLT EEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHHH KYGIPFTADEPTDVLTDKLARFYAERSLLKRPITPADQAEAFFLLLSQRLSQTTGQIITV HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE DGGLHEAFLR ECCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377; 8188684 [H]