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The map label for this gene is ydhC [H]

Identifier: 222525689

GI number: 222525689

Start: 3080666

End: 3081367

Strand: Reverse

Name: ydhC [H]

Synonym: Chy400_2440

Alternate gene names: 222525689

Gene position: 3081367-3080666 (Counterclockwise)

Preceding gene: 222525691

Following gene: 222525688

Centisome position: 58.48

GC content: 57.12

Gene sequence:

>702_bases
ATGAACAAATTGTATACAACTGATGAAACTTCTGCCGACCAGGTCTACCAGCGGCTACGCCGACTGTTAATAGAGGGGCA
TTATCCTCCCGGCTCGCGCCTGATCGAAGAACGGCTGGCGCAAGACCTTGGCGTGAGTCGGACGCCGGTGCGGCAGGCAT
TGGTGCGCGCCGCCGCCGAAGGGCTGGTGCAGATTTTTCCCAATCGTGGCGCTGTGGCGCGTAGTTTTACCGTTGATGAC
TTGATCGAAATGTATGATTTGCGCGCCTTGCTTGAGGGGCACGCAGCCTATCTGGCTGCCCGGCGGATTACCGCCGAACA
GCTTGCCCGGATGGAGATGGCGGCAACCGCTCTCGAACAGTCACTTACGCTGACTTTCGAGCGGCGTCAGGACGAAGTGC
ATTTTCTGGTCGAACACAATGCTGTTTTTCACCAGACCATTGCCGAGGCTGCCGGGAATCAGCGCCTGATCACGATGCTC
AACCAGATTGTGGCGGTTCCGTTGCAGTTTCGCTCGTTCTACTGGTATCAGCCTGATCAGCGCCAGATTTCCAATTTCTT
TCACCGCAGTATCCTCAATGCGCTGCGACTCGGTGATGGTGACCGCGCCCGCGCAATGATGCGCGAACACATTTTTTACG
GTCGAGATGTTCTGTTGCAGAGCCGGAGTGCGGAAGAGACGGCCGCGTCCGGCGAGGAGTAA

Upstream 100 bases:

>100_bases
TATTATAACTGTTTAGCATAGCTTTTACCCGATTGCGAAGGGCTATCTTTGCTCATTAGCGACGGCCATCTTTTACGGCA
TACTACTACAATCTATTGTA

Downstream 100 bases:

>100_bases
GCTATCGTGAGTTCCCAACGTCCACCACGACCACTCGATGATGTTCGGGTGCTGGAATTGGGTGCATTTCTGGCCGGGCC
GTTCTGTGGTCAGTTGCTGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAEGLVQIFPNRGAVARSFTVDD
LIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQSLTLTFERRQDEVHFLVEHNAVFHQTIAEAAGNQRLITML
NQIVAVPLQFRSFYWYQPDQRQISNFFHRSILNALRLGDGDRARAMMREHIFYGRDVLLQSRSAEETAASGEE

Sequences:

>Translated_233_residues
MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAEGLVQIFPNRGAVARSFTVDD
LIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQSLTLTFERRQDEVHFLVEHNAVFHQTIAEAAGNQRLITML
NQIVAVPLQFRSFYWYQPDQRQISNFFHRSILNALRLGDGDRARAMMREHIFYGRDVLLQSRSAEETAASGEE
>Mature_233_residues
MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAEGLVQIFPNRGAVARSFTVDD
LIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQSLTLTFERRQDEVHFLVEHNAVFHQTIAEAAGNQRLITML
NQIVAVPLQFRSFYWYQPDQRQISNFFHRSILNALRLGDGDRARAMMREHIFYGRDVLLQSRSAEETAASGEE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=29.064039408867, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26649; Mature: 26649

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLVQIFPNRGAVARSFTVDDLIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQ
HHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLTLTFERRQDEVHFLVEHNAVFHQTIAEAAGNQRLITMLNQIVAVPLQFRSFYWYQPDQ
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHH
RQISNFFHRSILNALRLGDGDRARAMMREHIFYGRDVLLQSRSAEETAASGEE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLVQIFPNRGAVARSFTVDDLIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQ
HHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLTLTFERRQDEVHFLVEHNAVFHQTIAEAAGNQRLITMLNQIVAVPLQFRSFYWYQPDQ
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHH
RQISNFFHRSILNALRLGDGDRARAMMREHIFYGRDVLLQSRSAEETAASGEE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]