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The map label for this gene is yfdE [H]

Identifier: 222525688

GI number: 222525688

Start: 3079451

End: 3080659

Strand: Reverse

Name: yfdE [H]

Synonym: Chy400_2439

Alternate gene names: 222525688

Gene position: 3080659-3079451 (Counterclockwise)

Preceding gene: 222525689

Following gene: 222525687

Centisome position: 58.47

GC content: 58.64

Gene sequence:

>1209_bases
GTGAGTTCCCAACGTCCACCACGACCACTCGATGATGTTCGGGTGCTGGAATTGGGTGCATTTCTGGCCGGGCCGTTCTG
TGGTCAGTTGCTGGCCGATTTCGGCGCTGAAGTGATCAAGGTCGAACCTCCCGGCAAGGGTGATCCGATGCGCGAATGGG
GGCGCCACCGCTACAAAGGGCGCACGCTCTGGTGGCCGGTGTTAGCCCGTAATAAGAAGTCGATTACGATTGATTTGCGC
ACACCCGAAGGACAGGCGTTGGTCAAGCGCCTGGTGCCCCACGTGGATATGGTGCTGGAGAATTTTCGCCCCGGTACGCT
TGAAGAGTGGGGGCTGGGATGGGAAGAGTTACACGCGCTCAATCCCGGTCTGATTATGATCCGGGTGAGCGGGTTTGGTC
AGACCGGTCCTTACCGCGATAAGGCCGGCTTCGGTTCGATTGGCGAGGCAATGGGGGGGATTCGGGCGATTACGGGCTTT
CCGGATCGTCCGCCCACCCGGATCGGGATCAGTATCGGCGACTCGCTGGCGGCTACGTTTGCTGCGCTGGGTGCCCTGGT
TGCGCTGCATCAGCGTCAACGCAGTGGACAGGGGCAGGTGGTTGATATTGGTATCTACGAGGGTGTGCTGGCCCTGATGG
AGAGTATGATCCCTGAGTATCAATTGACCGGCCATATCCGTGAGCGCACCGGGAACATTCTCCCTAATGTTGCCCCCTCA
AACATCTACCCAACGGCTGATGGAAGCTGGTTTGTGATTGGGGCGAACGCCGATACCATCTTCACCCGTCTCGCCCAGGC
TATGGGCCAGCCCGAACTGGCTACCGATCCGCGCTTCGCAACTCACCAGGCACGGGGTGAGCATCAGGCCGAACTTGATG
ATCTGATTGCAGCCTGGACGTTGAACTATACCGCCGACCAGTTGCAGGTCATGATGGACGAATACGGCGTCCCTGCCGGT
CGCATCTACACCGCGAAAGAGATGCTCTCCGATCCGCATTTTATCGCTCGCCAATCAATTATCGGCGTCCACGATCCCGA
TTTGGGCGAGATCAAGATGCAGAATGTGGTACCACGGCTGTCAGCCACCCCCGGCGGAGTGGATTGGACCGGTCCTGCGC
TCGGTCAGCACAATCGCGAAATCTTTACCGATCTGCTTGGTCTGACGGAGGATGATCTGGCAATGCTGCAAGCGAAGCGG
GTGATTTGA

Upstream 100 bases:

>100_bases
CCGCGCAATGATGCGCGAACACATTTTTTACGGTCGAGATGTTCTGTTGCAGAGCCGGAGTGCGGAAGAGACGGCCGCGT
CCGGCGAGGAGTAAGCTATC

Downstream 100 bases:

>100_bases
TGGAAGCAGTAACGATTGTTGACGTCGCACCCCGTGATGGGTTGCAGAACGAGCCTGACGTGTTAGAGCCGGCCACCCGG
GTTGAGTTGATCGAGCGCCT

Product: formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSSQRPPRPLDDVRVLELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKGRTLWWPVLARNKKSITIDLR
TPEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHALNPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGF
PDRPPTRIGISIGDSLAATFAALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTGNILPNVAPS
NIYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGEHQAELDDLIAAWTLNYTADQLQVMMDEYGVPAG
RIYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRLSATPGGVDWTGPALGQHNREIFTDLLGLTEDDLAMLQAKR
VI

Sequences:

>Translated_402_residues
MSSQRPPRPLDDVRVLELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKGRTLWWPVLARNKKSITIDLR
TPEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHALNPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGF
PDRPPTRIGISIGDSLAATFAALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTGNILPNVAPS
NIYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGEHQAELDDLIAAWTLNYTADQLQVMMDEYGVPAG
RIYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRLSATPGGVDWTGPALGQHNREIFTDLLGLTEDDLAMLQAKR
VI
>Mature_401_residues
SSQRPPRPLDDVRVLELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKGRTLWWPVLARNKKSITIDLRT
PEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHALNPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGFP
DRPPTRIGISIGDSLAATFAALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTGNILPNVAPSN
IYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGEHQAELDDLIAAWTLNYTADQLQVMMDEYGVPAGR
IYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRLSATPGGVDWTGPALGQHNREIFTDLLGLTEDDLAMLQAKRV
I

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=30.2631578947368, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI300863124, Length=406, Percent_Identity=28.8177339901478, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=28.2321899736148, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=25.5924170616114, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=29.6482412060301, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=29.6482412060301, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.8403041825095, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=35.0806451612903, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=41.044776119403, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=41.044776119403, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI87082093, Length=341, Percent_Identity=34.8973607038123, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=28.2973621103118, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=26.5, Blast_Score=123, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=269, Percent_Identity=31.9702602230483, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=270, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=32.3232323232323, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585488, Length=363, Percent_Identity=30.3030303030303, Blast_Score=143, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44034; Mature: 43903

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQRPPRPLDDVRVLELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKG
CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCC
RTLWWPVLARNKKSITIDLRTPEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHAL
CEEEEHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHC
NPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGFPDRPPTRIGISIGDSLAATF
CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCCCCCEEEEECCHHHHHHH
AALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTGNILPNVAPS
HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
NIYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGEHQAELDDLIAAWT
CEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHC
LNYTADQLQVMMDEYGVPAGRIYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRL
CCCCHHHHHHHHHHHCCCCCCEEEHHHHHCCCHHHHHHHCCCCCCCCCCCEEHHHHCCCC
SATPGGVDWTGPALGQHNREIFTDLLGLTEDDLAMLQAKRVI
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQRPPRPLDDVRVLELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKG
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCC
RTLWWPVLARNKKSITIDLRTPEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHAL
CEEEEHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHC
NPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGFPDRPPTRIGISIGDSLAATF
CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCCCCCEEEEECCHHHHHHH
AALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTGNILPNVAPS
HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
NIYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGEHQAELDDLIAAWT
CEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHC
LNYTADQLQVMMDEYGVPAGRIYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRL
CCCCHHHHHHHHHHHCCCCCCEEEHHHHHCCCHHHHHHHCCCCCCCCCCCEEHHHHCCCC
SATPGGVDWTGPALGQHNREIFTDLLGLTEDDLAMLQAKRVI
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]