Click here to switch to the map view.

The map label for this gene is ywqD [H]

Identifier: 222525534

GI number: 222525534

Start: 2888184

End: 2889593

Strand: Direct

Name: ywqD [H]

Synonym: Chy400_2283

Alternate gene names: 222525534

Gene position: 2888184-2889593 (Clockwise)

Preceding gene: 222525533

Following gene: 222525535

Centisome position: 54.82

GC content: 56.6

Gene sequence:

>1410_bases
TTGGAACTCAAAAACTACCTGCTCTTTATCTGGCGCTGGGCATGGTTGATCATCCTGTTTGCGCTCGTTGGTGGAGGCGT
AGGTTATGCCTACTCGCAGACCCAGCCCCGCCTTTACGAAGCCTCAACAATGCTCATGGTGAACCAGGATCAGGGTATCT
TTGCCCGCCCTTCACCAACCCTGGAAGATCTCCGGGCACGTGAACGGTATGCACTGACGGTACGTGAATTGTTGCTGGTA
CGGCCGGTGCTGGAGCGGGCGGCTGGAATGGTTGAAGGAGTGACGCCTGCGCAACTGGCGGCACGTACCAGCACAACTGA
AGTTGGGAAGACCGAGCTATTTCTGCTTTCGGTACGTGATACCAGCCGGCAACGTGCTGTTGAACTGGCCGATGCGATTG
TTGCCTCGTTCCAGGCTCTGGAGCGTGATCTGCTCGATAATCCCTACGCACAGGCATCAACCCTGATCGTCGTCGATCCG
GCGTATGCGAAACGCAATCCGGTCAGCCCGGATTATACCCGCAACATCGTCCTCAGTGCCTTCATTGCAGTACTGATTGC
AATTGTGATTGGTTTTCTCTACGACTACTTCAATACCCGGATCAGCGATGAGGGCGATTTGAGCCGGCGCGGTGGTGGGC
GGCCACTGGTTACCGTTGGTAGACTCAAAGGATCAACGCCGGCAGCCCAATTGGTGACGCTTAGGGAACCGGCATCGCTC
GATGCCGAAGCGTATCGTATGTTCCGGCTGCATCTCGACGCGCTGGCTGCCGACGTTCGTCCGCAGATGATTGCCGTTAT
CAGTGCAGTAGCCGGTGAGGGGCGGAGTCTGACAGCGGCTAACCTGGCGGTAGCGCTGGCACAAACCGGACGGCGCGTGA
TCCTGGTTGATGCGAATCTCCGCAATCCAATTCAGCACACATTGTTTGAGTTACCGAATCAGGGTGGTCTCTCGAACCTG
CTTAGCAGCACTGCTCAGGCTATTGAGCCATTTCTCCGGGTTACCGCACAGGCAAACCTCTACGTGCTGACAGCGGGTAA
TGTGTTGGGATTGCCGGCTCAATTGCTAGGTGGGGTGCATCTGGAGAAGGTGCTGGGCGCATTGCGTCAGTGTGCTGATG
TCATCATCATCGATACTGCCCCGCTCTTAACCTTTGCCGATACCACCCTGTTATTGCGTGCAGTGGATACGACCCTGGCC
GTCGTGCGATCCGACCAAACGACTGAGGGTGATCTGCGGCAAATGCTGGAGCTGTTGCAACAGACCGGTATTGCCTGTCT
GGGGATCGTGTTGAATGGTGTTCGTAAACGCCGCAGCCGATTCGCTCTTCCAGTTGCACGTCGCACCGAATCGACGCCTG
CGATGGTGGTGGCTAACCGCAGTGAGACCGTTGGCGATGCAGGAGATTGA

Upstream 100 bases:

>100_bases
ATCACACATTGCTCCACGCCACAGACCAGATGATCGTGAGAGATTTCGTTGTATCTGGCACGTGCAAGAGACCTCTTGTA
CGCACCGTGTGGAGGGTCAC

Downstream 100 bases:

>100_bases
CCTATGCGACGTTTCTGGTTGATGTTGATCACCATGCTGGCGTTGCTGCTAAGTGCATGTACTCAGCAGACGATGCCTGA
TACCGAAGCGGTAGCTGTGG

Product: capsular exopolysaccharide family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MELKNYLLFIWRWAWLIILFALVGGGVGYAYSQTQPRLYEASTMLMVNQDQGIFARPSPTLEDLRARERYALTVRELLLV
RPVLERAAGMVEGVTPAQLAARTSTTEVGKTELFLLSVRDTSRQRAVELADAIVASFQALERDLLDNPYAQASTLIVVDP
AYAKRNPVSPDYTRNIVLSAFIAVLIAIVIGFLYDYFNTRISDEGDLSRRGGGRPLVTVGRLKGSTPAAQLVTLREPASL
DAEAYRMFRLHLDALAADVRPQMIAVISAVAGEGRSLTAANLAVALAQTGRRVILVDANLRNPIQHTLFELPNQGGLSNL
LSSTAQAIEPFLRVTAQANLYVLTAGNVLGLPAQLLGGVHLEKVLGALRQCADVIIIDTAPLLTFADTTLLLRAVDTTLA
VVRSDQTTEGDLRQMLELLQQTGIACLGIVLNGVRKRRSRFALPVARRTESTPAMVVANRSETVGDAGD

Sequences:

>Translated_469_residues
MELKNYLLFIWRWAWLIILFALVGGGVGYAYSQTQPRLYEASTMLMVNQDQGIFARPSPTLEDLRARERYALTVRELLLV
RPVLERAAGMVEGVTPAQLAARTSTTEVGKTELFLLSVRDTSRQRAVELADAIVASFQALERDLLDNPYAQASTLIVVDP
AYAKRNPVSPDYTRNIVLSAFIAVLIAIVIGFLYDYFNTRISDEGDLSRRGGGRPLVTVGRLKGSTPAAQLVTLREPASL
DAEAYRMFRLHLDALAADVRPQMIAVISAVAGEGRSLTAANLAVALAQTGRRVILVDANLRNPIQHTLFELPNQGGLSNL
LSSTAQAIEPFLRVTAQANLYVLTAGNVLGLPAQLLGGVHLEKVLGALRQCADVIIIDTAPLLTFADTTLLLRAVDTTLA
VVRSDQTTEGDLRQMLELLQQTGIACLGIVLNGVRKRRSRFALPVARRTESTPAMVVANRSETVGDAGD
>Mature_469_residues
MELKNYLLFIWRWAWLIILFALVGGGVGYAYSQTQPRLYEASTMLMVNQDQGIFARPSPTLEDLRARERYALTVRELLLV
RPVLERAAGMVEGVTPAQLAARTSTTEVGKTELFLLSVRDTSRQRAVELADAIVASFQALERDLLDNPYAQASTLIVVDP
AYAKRNPVSPDYTRNIVLSAFIAVLIAIVIGFLYDYFNTRISDEGDLSRRGGGRPLVTVGRLKGSTPAAQLVTLREPASL
DAEAYRMFRLHLDALAADVRPQMIAVISAVAGEGRSLTAANLAVALAQTGRRVILVDANLRNPIQHTLFELPNQGGLSNL
LSSTAQAIEPFLRVTAQANLYVLTAGNVLGLPAQLLGGVHLEKVLGALRQCADVIIIDTAPLLTFADTTLLLRAVDTTLA
VVRSDQTTEGDLRQMLELLQQTGIACLGIVLNGVRKRRSRFALPVARRTESTPAMVVANRSETVGDAGD

Specific function: May be involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylates in vitro. Phosphorylates and activates in vitro two UDP-glucose dehydrogenases, YwqF and TuaD, as well as the DNA-binding proteins Ssb and SsbB [H]

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

Organism=Escherichia coli, GI1787216, Length=386, Percent_Identity=24.0932642487047, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082032, Length=332, Percent_Identity=26.5060240963855, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 50985; Mature: 50985

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKNYLLFIWRWAWLIILFALVGGGVGYAYSQTQPRLYEASTMLMVNQDQGIFARPSPT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECEEEEEEECCCCEEECCCCC
LEDLRARERYALTVRELLLVRPVLERAAGMVEGVTPAQLAARTSTTEVGKTELFLLSVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEEEECC
TSRQRAVELADAIVASFQALERDLLDNPYAQASTLIVVDPAYAKRNPVSPDYTRNIVLSA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
FIAVLIAIVIGFLYDYFNTRISDEGDLSRRGGGRPLVTVGRLKGSTPAAQLVTLREPASL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHEEEECCCCCC
DAEAYRMFRLHLDALAADVRPQMIAVISAVAGEGRSLTAANLAVALAQTGRRVILVDANL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCC
RNPIQHTLFELPNQGGLSNLLSSTAQAIEPFLRVTAQANLYVLTAGNVLGLPAQLLGGVH
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCC
LEKVLGALRQCADVIIIDTAPLLTFADTTLLLRAVDTTLAVVRSDQTTEGDLRQMLELLQ
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QTGIACLGIVLNGVRKRRSRFALPVARRTESTPAMVVANRSETVGDAGD
HCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MELKNYLLFIWRWAWLIILFALVGGGVGYAYSQTQPRLYEASTMLMVNQDQGIFARPSPT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECEEEEEEECCCCEEECCCCC
LEDLRARERYALTVRELLLVRPVLERAAGMVEGVTPAQLAARTSTTEVGKTELFLLSVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEEEECC
TSRQRAVELADAIVASFQALERDLLDNPYAQASTLIVVDPAYAKRNPVSPDYTRNIVLSA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
FIAVLIAIVIGFLYDYFNTRISDEGDLSRRGGGRPLVTVGRLKGSTPAAQLVTLREPASL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHEEEECCCCCC
DAEAYRMFRLHLDALAADVRPQMIAVISAVAGEGRSLTAANLAVALAQTGRRVILVDANL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCC
RNPIQHTLFELPNQGGLSNLLSSTAQAIEPFLRVTAQANLYVLTAGNVLGLPAQLLGGVH
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCC
LEKVLGALRQCADVIIIDTAPLLTFADTTLLLRAVDTTLAVVRSDQTTEGDLRQMLELLQ
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QTGIACLGIVLNGVRKRRSRFALPVARRTESTPAMVVANRSETVGDAGD
HCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]