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The map label for this gene is ysdC [H]

Identifier: 222525427

GI number: 222525427

Start: 2753045

End: 2754121

Strand: Reverse

Name: ysdC [H]

Synonym: Chy400_2172

Alternate gene names: 222525427

Gene position: 2754121-2753045 (Counterclockwise)

Preceding gene: 222525428

Following gene: 222525426

Centisome position: 52.27

GC content: 56.64

Gene sequence:

>1077_bases
GTGGATGCAATGCTGCAACTCTTGAAAGATCTGACCGAGGCTCCCGGCGCTTCCGGCTATGAGAGTCCGGTTCGCGCAGT
CATGCGCCGGTATCTGGAGCCGGTCGGCGAGATTGAATTCGACCACCTGGGAGGTATTATTGCACGTCGGACAGGAGTCA
GCGATGGCCCACGTATCGCGCTGGCTGCTCATCTCGATGAAATTGGGTTGCTGGTGACCCGGATCACCGATGATGGATTT
CTCAAATTTCAACCACTTGGGGGCTGGTGGGATCACGTGCTCTTAGGGATGCGGGTGGATGTGATTACCCGCCAGGGAGC
CATTCCCGGCATGATCGGCGCTAAACCACCTCATATCCTCGGCAACGATGAACGGAGTCGTCTTGTTGACAAGAAGACGA
TGTACATTGACATTGGCGCTACGTCGCGCGAGGAAGCTATTGCCTGGGGGGTACGACCAGGAGATGCTGTTGTGCCATTT
GGCCCACTTACCCCACTGCGCAATCCCGATCTGCTGATGGCTAAGGCGTTAGATAATCGCGTTGGTTGTGCAATTGTGGT
TGAGACATTACGTCGCTTAGCCACCGAACACCATCCCAACATTGTCTTCGGGATCGGCAATGTCCAGGAAGAGGTAGGGC
TGCGCGGTGCCGCAACAACGACCTATATTGTCAAACCTGACATTGGCCTTGCGATTGATACAGCCATTGCCGGTGACACC
CCTGGCGTCGGCGCTGACGACGCTATGAGTCGACTCGGTCAGGGGCCGGCGATGCTCTTGATCGATGGCTCACTCATTGC
TCACTCGGCCTTGCGCCATCTCGTGATTGATGTTGCTGCTGAGGAGGGGATTCCGCTGCAATTTGATCTGATGCCCGGCG
GTGGCACTGATGGTGGCCGGATGCATCTCTTCGGCAGTGGTGTGCCCACAGTCGTGCTTGGGCCGCCGGTACGCTACATC
CACTCCGCTTCGGCCATTGTGCATCGGCGTGATGTAGAGCAGACGGTACAGTTACTCCTGGCCCTGATTCGACGCCTGGA
TGACAAGACAGTTCAACGATTGCAATACGAGGCGTAA

Upstream 100 bases:

>100_bases
CGCAGCTACACTCGATGGCCTGATAACAGATCGTACAACTGCCGAACAATGGGTTCGCCGGCATCTGGTCGATTCCTGAT
AGGTGAGAGAGGAAAAATCT

Downstream 100 bases:

>100_bases
GTAACCATCATGAATAGCGTGATTCGACTCCTTCAAGCCCGTCTACCACTCTGGCTGACAATACCGTTGCTGTTTATAAC
GCTTATCGGTGGTACGAGCA

Product: cellulase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MDAMLQLLKDLTEAPGASGYESPVRAVMRRYLEPVGEIEFDHLGGIIARRTGVSDGPRIALAAHLDEIGLLVTRITDDGF
LKFQPLGGWWDHVLLGMRVDVITRQGAIPGMIGAKPPHILGNDERSRLVDKKTMYIDIGATSREEAIAWGVRPGDAVVPF
GPLTPLRNPDLLMAKALDNRVGCAIVVETLRRLATEHHPNIVFGIGNVQEEVGLRGAATTTYIVKPDIGLAIDTAIAGDT
PGVGADDAMSRLGQGPAMLLIDGSLIAHSALRHLVIDVAAEEGIPLQFDLMPGGGTDGGRMHLFGSGVPTVVLGPPVRYI
HSASAIVHRRDVEQTVQLLLALIRRLDDKTVQRLQYEA

Sequences:

>Translated_358_residues
MDAMLQLLKDLTEAPGASGYESPVRAVMRRYLEPVGEIEFDHLGGIIARRTGVSDGPRIALAAHLDEIGLLVTRITDDGF
LKFQPLGGWWDHVLLGMRVDVITRQGAIPGMIGAKPPHILGNDERSRLVDKKTMYIDIGATSREEAIAWGVRPGDAVVPF
GPLTPLRNPDLLMAKALDNRVGCAIVVETLRRLATEHHPNIVFGIGNVQEEVGLRGAATTTYIVKPDIGLAIDTAIAGDT
PGVGADDAMSRLGQGPAMLLIDGSLIAHSALRHLVIDVAAEEGIPLQFDLMPGGGTDGGRMHLFGSGVPTVVLGPPVRYI
HSASAIVHRRDVEQTVQLLLALIRRLDDKTVQRLQYEA
>Mature_358_residues
MDAMLQLLKDLTEAPGASGYESPVRAVMRRYLEPVGEIEFDHLGGIIARRTGVSDGPRIALAAHLDEIGLLVTRITDDGF
LKFQPLGGWWDHVLLGMRVDVITRQGAIPGMIGAKPPHILGNDERSRLVDKKTMYIDIGATSREEAIAWGVRPGDAVVPF
GPLTPLRNPDLLMAKALDNRVGCAIVVETLRRLATEHHPNIVFGIGNVQEEVGLRGAATTTYIVKPDIGLAIDTAIAGDT
PGVGADDAMSRLGQGPAMLLIDGSLIAHSALRHLVIDVAAEEGIPLQFDLMPGGGTDGGRMHLFGSGVPTVVLGPPVRYI
HSASAIVHRRDVEQTVQLLLALIRRLDDKTVQRLQYEA

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=351, Percent_Identity=40.1709401709402, Blast_Score=263, Evalue=1e-71,
Organism=Escherichia coli, GI1788727, Length=355, Percent_Identity=38.8732394366197, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI87082417, Length=346, Percent_Identity=31.5028901734104, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38478; Mature: 38478

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMLQLLKDLTEAPGASGYESPVRAVMRRYLEPVGEIEFDHLGGIIARRTGVSDGPRIA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCEE
LAAHLDEIGLLVTRITDDGFLKFQPLGGWWDHVLLGMRVDVITRQGAIPGMIGAKPPHIL
EEEHHHHHCEEEEEECCCCCEEEEECCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCC
GNDERSRLVDKKTMYIDIGATSREEAIAWGVRPGDAVVPFGPLTPLRNPDLLMAKALDNR
CCCHHHHHHCCEEEEEEECCCCCCHHEEECCCCCCCEECCCCCCCCCCCCHHHHHHHCCC
VGCAIVVETLRRLATEHHPNIVFGIGNVQEEVGLRGAATTTYIVKPDIGLAIDTAIAGDT
CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCC
PGVGADDAMSRLGQGPAMLLIDGSLIAHSALRHLVIDVAAEEGIPLQFDLMPGGGTDGGR
CCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
MHLFGSGVPTVVLGPPVRYIHSASAIVHRRDVEQTVQLLLALIRRLDDKTVQRLQYEA
EEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MDAMLQLLKDLTEAPGASGYESPVRAVMRRYLEPVGEIEFDHLGGIIARRTGVSDGPRIA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCEE
LAAHLDEIGLLVTRITDDGFLKFQPLGGWWDHVLLGMRVDVITRQGAIPGMIGAKPPHIL
EEEHHHHHCEEEEEECCCCCEEEEECCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCC
GNDERSRLVDKKTMYIDIGATSREEAIAWGVRPGDAVVPFGPLTPLRNPDLLMAKALDNR
CCCHHHHHHCCEEEEEEECCCCCCHHEEECCCCCCCEECCCCCCCCCCCCHHHHHHHCCC
VGCAIVVETLRRLATEHHPNIVFGIGNVQEEVGLRGAATTTYIVKPDIGLAIDTAIAGDT
CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCC
PGVGADDAMSRLGQGPAMLLIDGSLIAHSALRHLVIDVAAEEGIPLQFDLMPGGGTDGGR
CCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
MHLFGSGVPTVVLGPPVRYIHSASAIVHRRDVEQTVQLLLALIRRLDDKTVQRLQYEA
EEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]