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The map label for this gene is ctpA [H]

Identifier: 222525426

GI number: 222525426

Start: 2751764

End: 2753035

Strand: Reverse

Name: ctpA [H]

Synonym: Chy400_2171

Alternate gene names: 222525426

Gene position: 2753035-2751764 (Counterclockwise)

Preceding gene: 222525427

Following gene: 222525425

Centisome position: 52.25

GC content: 59.12

Gene sequence:

>1272_bases
ATGAATAGCGTGATTCGACTCCTTCAAGCCCGTCTACCACTCTGGCTGACAATACCGTTGCTGTTTATAACGCTTATCGG
TGGTACGAGCAGCGGCATCTGGGTCGGGATATGGTTGAGTTCATCACAAAGCCAGCAGACGGCCACCTGTCCCGAAACCG
ATGCCATCTGCGCCGACTTTGCCGTCTTTTGGGAGGTCTGGCAACTGGCGCGTGAACGGTACGTTGATCCGACGGCTGCC
GATCCGGAACGGATGCTGGAAGGCGCAATTGACGGAATGGTAGCGACACTCGGCGATGAGGGGCATACGCGCTTTTTGAC
GGCTGCCGAAGCCGCACTGTGGCAGGAATCGCTGAGTGGCGCATTTGAAGGGATCGGCATTTACGTGGGTGAACGTGATG
GGTCATTGCTGGTGCTGGCCCTGATTGAGGGGTCACCCGCAGCCGCTGCCGGTTTACAACCGGGAGACCGGATTCTGGCT
GTTGATGGAGCCTCGGTTGCAGGCTGGTCGATTGATGAACTGGTAGCACGGGTGCGTGGCCCGGCAGGCACAGCGGTCAC
GCTAGAGGTGAGTCGTCGTGATGTTGACACGCTGCGGTTTACGATTACGCGGGCCAGAATTACGGTGCCGAGCGTGAGCT
GGGCGCTCCTTCCCGACCGGATTGCTTTGATCCAGATAACGTCGTTTGACGAGCAGGCAGCACGCGGCTTGCGTAACGCA
CTCACTGAAGCGCAAGCCGCCGGCGCCGAGCGGATCATTCTCGATCTCCGCAATAATCCCGGCGGGCTGCTGAGCGCCTT
ACTCACCATTGCCGGTGAATTCTTGCCAGCCGAAACACCGGTGTTAATCGAACGGGGTCGTGATGGCAGTCAGCGAATCA
ATGCCACGCGCACTGCCGGGATTGCCCAGGATATGCCAATGGTCGTCTTGATCAATGGTGGCTCGGCCAGTGCCGCCGAG
ATTCTGGCCGGGGCATTGCAAGATGCCGGTCGGGCAATCCTGGTGGGTGAGACAACGGTAGGCACCGGTACGGTGTTGAC
ACCTTTCCGGCTCAAAGATGGTGCCCAACTCCTGCTCGGCACCCAGGAGTGGCGTACACCGGCCGGACGACAGATTCGTG
GGGTTGGAATTACGCCTGATCGCGTCGTTCCTCAACCTCTGGAAGCACCTATCCTGTCGCCTTCCAGTATTCGTAGCCTG
AGTGCGAACGAACTGGCGAGCATTGAGGATGCCCAGTTACTGGCAGCGATTGCCGTCTTCAACGAGCGCTGA

Upstream 100 bases:

>100_bases
GCGTGATGTAGAGCAGACGGTACAGTTACTCCTGGCCCTGATTCGACGCCTGGATGACAAGACAGTTCAACGATTGCAAT
ACGAGGCGTAAGTAACCATC

Downstream 100 bases:

>100_bases
GCGATCAGAAGCCGAATGAGTGACGGATAGATTGCTCATTCCGCAGCAATGCTGTGACAGACCAGATAGCCACCTGACGT
GGCCGATCAGCGGCAAGAAG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MNSVIRLLQARLPLWLTIPLLFITLIGGTSSGIWVGIWLSSSQSQQTATCPETDAICADFAVFWEVWQLARERYVDPTAA
DPERMLEGAIDGMVATLGDEGHTRFLTAAEAALWQESLSGAFEGIGIYVGERDGSLLVLALIEGSPAAAAGLQPGDRILA
VDGASVAGWSIDELVARVRGPAGTAVTLEVSRRDVDTLRFTITRARITVPSVSWALLPDRIALIQITSFDEQAARGLRNA
LTEAQAAGAERIILDLRNNPGGLLSALLTIAGEFLPAETPVLIERGRDGSQRINATRTAGIAQDMPMVVLINGGSASAAE
ILAGALQDAGRAILVGETTVGTGTVLTPFRLKDGAQLLLGTQEWRTPAGRQIRGVGITPDRVVPQPLEAPILSPSSIRSL
SANELASIEDAQLLAAIAVFNER

Sequences:

>Translated_423_residues
MNSVIRLLQARLPLWLTIPLLFITLIGGTSSGIWVGIWLSSSQSQQTATCPETDAICADFAVFWEVWQLARERYVDPTAA
DPERMLEGAIDGMVATLGDEGHTRFLTAAEAALWQESLSGAFEGIGIYVGERDGSLLVLALIEGSPAAAAGLQPGDRILA
VDGASVAGWSIDELVARVRGPAGTAVTLEVSRRDVDTLRFTITRARITVPSVSWALLPDRIALIQITSFDEQAARGLRNA
LTEAQAAGAERIILDLRNNPGGLLSALLTIAGEFLPAETPVLIERGRDGSQRINATRTAGIAQDMPMVVLINGGSASAAE
ILAGALQDAGRAILVGETTVGTGTVLTPFRLKDGAQLLLGTQEWRTPAGRQIRGVGITPDRVVPQPLEAPILSPSSIRSL
SANELASIEDAQLLAAIAVFNER
>Mature_423_residues
MNSVIRLLQARLPLWLTIPLLFITLIGGTSSGIWVGIWLSSSQSQQTATCPETDAICADFAVFWEVWQLARERYVDPTAA
DPERMLEGAIDGMVATLGDEGHTRFLTAAEAALWQESLSGAFEGIGIYVGERDGSLLVLALIEGSPAAAAGLQPGDRILA
VDGASVAGWSIDELVARVRGPAGTAVTLEVSRRDVDTLRFTITRARITVPSVSWALLPDRIALIQITSFDEQAARGLRNA
LTEAQAAGAERIILDLRNNPGGLLSALLTIAGEFLPAETPVLIERGRDGSQRINATRTAGIAQDMPMVVLINGGSASAAE
ILAGALQDAGRAILVGETTVGTGTVLTPFRLKDGAQLLLGTQEWRTPAGRQIRGVGITPDRVVPQPLEAPILSPSSIRSL
SANELASIEDAQLLAAIAVFNER

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=29.3548387096774, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 44735; Mature: 44735

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVIRLLQARLPLWLTIPLLFITLIGGTSSGIWVGIWLSSSQSQQTATCPETDAICADF
CCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH
AVFWEVWQLARERYVDPTAADPERMLEGAIDGMVATLGDEGHTRFLTAAEAALWQESLSG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEEECCCCCCEEEEHHHHHHHHHHHHCC
AFEGIGIYVGERDGSLLVLALIEGSPAAAAGLQPGDRILAVDGASVAGWSIDELVARVRG
CCCCEEEEEECCCCCEEEEEEECCCCCHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCC
PAGTAVTLEVSRRDVDTLRFTITRARITVPSVSWALLPDRIALIQITSFDEQAARGLRNA
CCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEECCCCEEEEEEECCCHHHHHHHHHH
LTEAQAAGAERIILDLRNNPGGLLSALLTIAGEFLPAETPVLIERGRDGSQRINATRTAG
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCHHHHCC
IAQDMPMVVLINGGSASAAEILAGALQDAGRAILVGETTVGTGTVLTPFRLKDGAQLLLG
CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECEEECCCCEEEEC
TQEWRTPAGRQIRGVGITPDRVVPQPLEAPILSPSSIRSLSANELASIEDAQLLAAIAVF
CHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHH
NER
CCC
>Mature Secondary Structure
MNSVIRLLQARLPLWLTIPLLFITLIGGTSSGIWVGIWLSSSQSQQTATCPETDAICADF
CCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH
AVFWEVWQLARERYVDPTAADPERMLEGAIDGMVATLGDEGHTRFLTAAEAALWQESLSG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEEECCCCCCEEEEHHHHHHHHHHHHCC
AFEGIGIYVGERDGSLLVLALIEGSPAAAAGLQPGDRILAVDGASVAGWSIDELVARVRG
CCCCEEEEEECCCCCEEEEEEECCCCCHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCC
PAGTAVTLEVSRRDVDTLRFTITRARITVPSVSWALLPDRIALIQITSFDEQAARGLRNA
CCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEECCCCEEEEEEECCCHHHHHHHHHH
LTEAQAAGAERIILDLRNNPGGLLSALLTIAGEFLPAETPVLIERGRDGSQRINATRTAG
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCHHHHCC
IAQDMPMVVLINGGSASAAEILAGALQDAGRAILVGETTVGTGTVLTPFRLKDGAQLLLG
CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECEEECCCCEEEEC
TQEWRTPAGRQIRGVGITPDRVVPQPLEAPILSPSSIRSLSANELASIEDAQLLAAIAVF
CHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHH
NER
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]