| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is ycjG [C]
Identifier: 222525204
GI number: 222525204
Start: 2468342
End: 2469430
Strand: Direct
Name: ycjG [C]
Synonym: Chy400_1944
Alternate gene names: 222525204
Gene position: 2468342-2469430 (Clockwise)
Preceding gene: 222525203
Following gene: 222525205
Centisome position: 46.85
GC content: 61.89
Gene sequence:
>1089_bases ATGAGTACCGTCATTCGCACATTATCCGTTGCTCCGCTCGACATCCCGCTGCGCAGTCCGTTCGGGATTGCCGGCGGTGC GCAAGAGGTGGCGCGCAACCTGTTGGTCACAGTCGAACTGATGAACGGCGTCCGGGGCTACGGTGAAGCGGCTCCTTTTC CGGCTTTCAACGGTGAAACGCAGGAAAAGGCACTCCAGGCGATAGAGTCGGTTCGTTCGGCGGTAGAGGGTGGTGATGTG CGTGAATGGCGGGCCATCGCCGGTCTGCTCCGCGACCGCATTCCCGCCAGTGGGTCAGCCCGGTGTGCGATTGAGACGGC GATCCTCGATGCCTTGACCCGGCACTATCGACTGCCGATGTACGTCTTCTTCGGCGGGGCCGGTCACACGCTCGAAACCG ATATGACGATCACGACCGGCACGGTGGAAGAAGCTGCGCTGGCGACGCTAGACATTCTCGAACGCGGCATTCGTCAGATC AAGGTGAAGATCGGCGGCTATGATGTGCAGCACGACCTGGCCCGCATCACCGCGATCCGGGCGCTCGCCCCTGATGCCCC GCTGATCCTCGATGGCAACGGTGGCTTCACCGCCGAAACAATGCTCGAACTGCTCGGTGCGCTCAGCCTTCAGCAGATCG TGCCGGCGTTGGTGGAGCAACCGGTGGCCGCCGACGACTGGCCGGGTTTGCGGCAGTTGGTACAGTGGGGCGGCGCACCA ATCGCCGCCGACGAGACGGCGAGCAGTTCGCTGAACGTGCTACGGATCGTACAAGAGCGTGCCGCGCATGTCATCAATAT CAAACTGATGAAGACCGGCATTGTGGAAGCGCTTGAGATTGCGGCTATCGCTCGTGCTGCCGGACTGGGATTGATGATTG GGGGCATGGTCGAGTCGATCCTGGCCATGACCGTATCGGCTCACTTCGCTGCCGGCTTAGGCGGCTTCCGTTTCGTTGAT CTGGATACGCCGCTATTTCTGGCCACGAATCCTTTCCAGGGCGGATTTGAGCTGCGGGGCGGCGTGATCGACCTCTGCCA CATAGCGACAGGCCATGGGGTAGAGCCGGCCACACTGCTGGCGGCATAA
Upstream 100 bases:
>100_bases GCAGAGCGTCTGGCAGGTGTTGGGGGCTGTGATTGTGCTGGTAACGATTACCGTGTATCTACGCCGGCAGTATCGCGTCT GAGGTCAGCTTGAGGAACGT
Downstream 100 bases:
>100_bases CAATCGTCACTCCCATCCATAACGGATTGTACAATTCAACCATAGTCTTCCCGCCGGACATCTTCTATACTGCGTATAGA CGTTATATTCGCATTGATGC
Product: Mandelate racemase/muconate lactonizing protein
Products: NA
Alternate protein names: AE epimerase; AEE [H]
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MSTVIRTLSVAPLDIPLRSPFGIAGGAQEVARNLLVTVELMNGVRGYGEAAPFPAFNGETQEKALQAIESVRSAVEGGDV REWRAIAGLLRDRIPASGSARCAIETAILDALTRHYRLPMYVFFGGAGHTLETDMTITTGTVEEAALATLDILERGIRQI KVKIGGYDVQHDLARITAIRALAPDAPLILDGNGGFTAETMLELLGALSLQQIVPALVEQPVAADDWPGLRQLVQWGGAP IAADETASSSLNVLRIVQERAAHVINIKLMKTGIVEALEIAAIARAAGLGLMIGGMVESILAMTVSAHFAAGLGGFRFVD LDTPLFLATNPFQGGFELRGGVIDLCHIATGHGVEPATLLAA
Sequences:
>Translated_362_residues MSTVIRTLSVAPLDIPLRSPFGIAGGAQEVARNLLVTVELMNGVRGYGEAAPFPAFNGETQEKALQAIESVRSAVEGGDV REWRAIAGLLRDRIPASGSARCAIETAILDALTRHYRLPMYVFFGGAGHTLETDMTITTGTVEEAALATLDILERGIRQI KVKIGGYDVQHDLARITAIRALAPDAPLILDGNGGFTAETMLELLGALSLQQIVPALVEQPVAADDWPGLRQLVQWGGAP IAADETASSSLNVLRIVQERAAHVINIKLMKTGIVEALEIAAIARAAGLGLMIGGMVESILAMTVSAHFAAGLGGFRFVD LDTPLFLATNPFQGGFELRGGVIDLCHIATGHGVEPATLLAA >Mature_361_residues STVIRTLSVAPLDIPLRSPFGIAGGAQEVARNLLVTVELMNGVRGYGEAAPFPAFNGETQEKALQAIESVRSAVEGGDVR EWRAIAGLLRDRIPASGSARCAIETAILDALTRHYRLPMYVFFGGAGHTLETDMTITTGTVEEAALATLDILERGIRQIK VKIGGYDVQHDLARITAIRALAPDAPLILDGNGGFTAETMLELLGALSLQQIVPALVEQPVAADDWPGLRQLVQWGGAPI AADETASSSLNVLRIVQERAAHVINIKLMKTGIVEALEIAAIARAAGLGLMIGGMVESILAMTVSAHFAAGLGGFRFVDL DTPLFLATNPFQGGFELRGGVIDLCHIATGHGVEPATLLAA
Specific function: Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L- Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI87081876, Length=331, Percent_Identity=32.6283987915408, Blast_Score=122, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: NA
Molecular weight: Translated: 38112; Mature: 37980
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVIRTLSVAPLDIPLRSPFGIAGGAQEVARNLLVTVELMNGVRGYGEAAPFPAFNGET CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH QEKALQAIESVRSAVEGGDVREWRAIAGLLRDRIPASGSARCAIETAILDALTRHYRLPM HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE YVFFGGAGHTLETDMTITTGTVEEAALATLDILERGIRQIKVKIGGYDVQHDLARITAIR EEEECCCCCEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHH ALAPDAPLILDGNGGFTAETMLELLGALSLQQIVPALVEQPVAADDWPGLRQLVQWGGAP HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC IAADETASSSLNVLRIVQERAAHVINIKLMKTGIVEALEIAAIARAAGLGLMIGGMVESI CCCCCCCCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAMTVSAHFAAGLGGFRFVDLDTPLFLATNPFQGGFELRGGVIDLCHIATGHGVEPATLL HHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCEECCCEEEEEEECCCCCCCCHHHH AA CC >Mature Secondary Structure STVIRTLSVAPLDIPLRSPFGIAGGAQEVARNLLVTVELMNGVRGYGEAAPFPAFNGET CCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH QEKALQAIESVRSAVEGGDVREWRAIAGLLRDRIPASGSARCAIETAILDALTRHYRLPM HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE YVFFGGAGHTLETDMTITTGTVEEAALATLDILERGIRQIKVKIGGYDVQHDLARITAIR EEEECCCCCEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHH ALAPDAPLILDGNGGFTAETMLELLGALSLQQIVPALVEQPVAADDWPGLRQLVQWGGAP HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC IAADETASSSLNVLRIVQERAAHVINIKLMKTGIVEALEIAAIARAAGLGLMIGGMVESI CCCCCCCCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAMTVSAHFAAGLGGFRFVDLDTPLFLATNPFQGGFELRGGVIDLCHIATGHGVEPATLL HHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCEECCCEEEEEEECCCCCCCCHHHH AA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]