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The map label for this gene is rfbB [H]

Identifier: 222525145

GI number: 222525145

Start: 2379644

End: 2380876

Strand: Direct

Name: rfbB [H]

Synonym: Chy400_1883

Alternate gene names: 222525145

Gene position: 2379644-2380876 (Clockwise)

Preceding gene: 222525144

Following gene: 222525146

Centisome position: 45.16

GC content: 55.23

Gene sequence:

>1233_bases
ATGAGTGTCGTGATTGAGTTTGACAAGGTTTCACGGCAGTTTGTCCGTCGCCAGAACGCCTCGACTATTCAAGAGCGTTT
TATGGGCCTGATCCGGGGGCTACCGCCGGCAGAAGCCTTCTGGGCCGTGCGTGATGTGAGCTTTGCCGTTGAAGAAGGGC
AGAGCATTGGTCTCGTTGGGCACAATGGTGCCGGCAAGAGTACCATTCTCAAATTGATGACCCGCGTACTTGAACCGACT
AGCGGTCGGGTAACAACCCAGGGTCGCATCGCGGCCCTGCTCGAACTGGGCAGTGGCTTTCATCCCGAACTCAGTGGTCG
CGAGAACGTCTTTCTCTACGGATCACTGATGGGCTTTGGCCGCAAAGAGATGCAGCGCAAACTGCCAGAAATTATCGAAT
TCTCCGAAATTGGGCCGTTTCTCGATACCGAGGTCAAACACTATTCGTCGGGAATGTACACCCGGCTAGCGTTTGCTGTC
GCAACCGCCGTTGATCCCGACATCCTGATTACTGATGAAGTACTGGCCGTCGGTGATGAGACCTTTCAGCGCAAATGTAT
TGATCGCATCTATGGCTTTCGACGGGCCGGGAAGACCATCGTCTTCGTCTCGCACGCGCTTGACGTTGTGCGCTCACTTT
GTGATGTCGCCGTCTGGCTCGACCACGGCGAAATGAAAGCGTATGGTGAGGCTGGTAAGGTGGTTGACGCCTATCTGGCC
GATGTGAACGAGCGCGAACGGGCTGAGTTTGAGGAGCGTTTGCACAGTGAAGATGACGATCAGATTCGCGAATCGCGCAT
GCGCCGTGGTAGCCGCGAAGTTGAGATCACGCGCGTGCAACTCCTCGATGCGCAGGGGCGTGAACGTATTACCTTCCGTA
CCCACGAACCGCTCACCATTCGCATTCACTATCTCGCCCATCAACGGATCGAGCGCCCGGTCTTCGGTGTGGGGATCAAC
CACGAAAGTGGGCCGTGGTTGACCGGGCCAAATACCGGTTTTGATAAATACCATATCCCGTTCATTGAAGGAGCTGGTAT
CATCGATTATCACATTCCGCGCTTGCCCTTCCTTGGTGGACGCTACCTGGTCAGTGCCTCGGCCACCGATTCCACACAGT
TGTACGAATTTGATGTTCACGACCGCATGTATCCTCTGGTCATCCATAGTGATGGTCTGAGCCAACGGTACGGCATGGTG
TTCTGCGAAGGGAACTGGAGCTGGCACGGATGA

Upstream 100 bases:

>100_bases
CGCTTAGTGCGATGCTCCGGGTCGGTCTGACCGGACTGATCATCCTCGCGTTTGGCTACTGGGTGTTCCAGCGCACCAGC
CGCCATTTTGGTGAAGAACT

Downstream 100 bases:

>100_bases
GTGATCTGCTGATCATCAGCCATGATGTCGTTGGTCAACGAATGGCTGGACCTGGCATTCGGATGTGGGAGCTGGCACGA
ACGTTGGCCAGACAGATTCC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MSVVIEFDKVSRQFVRRQNASTIQERFMGLIRGLPPAEAFWAVRDVSFAVEEGQSIGLVGHNGAGKSTILKLMTRVLEPT
SGRVTTQGRIAALLELGSGFHPELSGRENVFLYGSLMGFGRKEMQRKLPEIIEFSEIGPFLDTEVKHYSSGMYTRLAFAV
ATAVDPDILITDEVLAVGDETFQRKCIDRIYGFRRAGKTIVFVSHALDVVRSLCDVAVWLDHGEMKAYGEAGKVVDAYLA
DVNERERAEFEERLHSEDDDQIRESRMRRGSREVEITRVQLLDAQGRERITFRTHEPLTIRIHYLAHQRIERPVFGVGIN
HESGPWLTGPNTGFDKYHIPFIEGAGIIDYHIPRLPFLGGRYLVSASATDSTQLYEFDVHDRMYPLVIHSDGLSQRYGMV
FCEGNWSWHG

Sequences:

>Translated_410_residues
MSVVIEFDKVSRQFVRRQNASTIQERFMGLIRGLPPAEAFWAVRDVSFAVEEGQSIGLVGHNGAGKSTILKLMTRVLEPT
SGRVTTQGRIAALLELGSGFHPELSGRENVFLYGSLMGFGRKEMQRKLPEIIEFSEIGPFLDTEVKHYSSGMYTRLAFAV
ATAVDPDILITDEVLAVGDETFQRKCIDRIYGFRRAGKTIVFVSHALDVVRSLCDVAVWLDHGEMKAYGEAGKVVDAYLA
DVNERERAEFEERLHSEDDDQIRESRMRRGSREVEITRVQLLDAQGRERITFRTHEPLTIRIHYLAHQRIERPVFGVGIN
HESGPWLTGPNTGFDKYHIPFIEGAGIIDYHIPRLPFLGGRYLVSASATDSTQLYEFDVHDRMYPLVIHSDGLSQRYGMV
FCEGNWSWHG
>Mature_409_residues
SVVIEFDKVSRQFVRRQNASTIQERFMGLIRGLPPAEAFWAVRDVSFAVEEGQSIGLVGHNGAGKSTILKLMTRVLEPTS
GRVTTQGRIAALLELGSGFHPELSGRENVFLYGSLMGFGRKEMQRKLPEIIEFSEIGPFLDTEVKHYSSGMYTRLAFAVA
TAVDPDILITDEVLAVGDETFQRKCIDRIYGFRRAGKTIVFVSHALDVVRSLCDVAVWLDHGEMKAYGEAGKVVDAYLAD
VNERERAEFEERLHSEDDDQIRESRMRRGSREVEITRVQLLDAQGRERITFRTHEPLTIRIHYLAHQRIERPVFGVGINH
ESGPWLTGPNTGFDKYHIPFIEGAGIIDYHIPRLPFLGGRYLVSASATDSTQLYEFDVHDRMYPLVIHSDGLSQRYGMVF
CEGNWSWHG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=234, Percent_Identity=26.0683760683761, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI27477115, Length=206, Percent_Identity=29.6116504854369, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI6005701, Length=228, Percent_Identity=27.1929824561404, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI27436953, Length=203, Percent_Identity=28.0788177339901, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=29.064039408867, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=26.865671641791, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI47078218, Length=199, Percent_Identity=28.1407035175879, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI45446740, Length=199, Percent_Identity=28.1407035175879, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI27262624, Length=239, Percent_Identity=25.1046025104602, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI27262626, Length=239, Percent_Identity=25.1046025104602, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI105990541, Length=205, Percent_Identity=27.3170731707317, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI30795238, Length=200, Percent_Identity=24.5, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27881501, Length=200, Percent_Identity=24.5, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21536376, Length=202, Percent_Identity=25.7425742574257, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI1786398, Length=203, Percent_Identity=29.5566502463054, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789032, Length=214, Percent_Identity=26.1682242990654, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=204, Percent_Identity=29.9019607843137, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=23.1818181818182, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081782, Length=200, Percent_Identity=25.5, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787758, Length=218, Percent_Identity=25.2293577981651, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788506, Length=219, Percent_Identity=26.4840182648402, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=22.5352112676056, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790467, Length=208, Percent_Identity=25, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=198, Percent_Identity=29.2929292929293, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=23.5042735042735, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=237, Percent_Identity=27.8481012658228, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=198, Percent_Identity=26.7676767676768, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=219, Percent_Identity=27.3972602739726, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=27.6190476190476, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=26.2135922330097, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=26.2135922330097, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=26.2135922330097, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=207, Percent_Identity=28.5024154589372, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=205, Percent_Identity=28.780487804878, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007184, Length=187, Percent_Identity=28.8770053475936, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221500365, Length=187, Percent_Identity=28.8770053475936, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221512771, Length=206, Percent_Identity=28.1553398058252, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=26.5402843601896, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24666092, Length=245, Percent_Identity=27.3469387755102, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28573571, Length=247, Percent_Identity=21.4574898785425, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=247, Percent_Identity=21.4574898785425, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648314, Length=245, Percent_Identity=24.8979591836735, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574150, Length=203, Percent_Identity=25.1231527093596, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007328, Length=203, Percent_Identity=25.1231527093596, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 46410; Mature: 46279

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVIEFDKVSRQFVRRQNASTIQERFMGLIRGLPPAEAFWAVRDVSFAVEEGQSIGLVG
CEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEE
HNGAGKSTILKLMTRVLEPTSGRVTTQGRIAALLELGSGFHPELSGRENVFLYGSLMGFG
CCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHCC
RKEMQRKLPEIIEFSEIGPFLDTEVKHYSSGMYTRLAFAVATAVDPDILITDEVLAVGDE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECHHHHCCCH
TFQRKCIDRIYGFRRAGKTIVFVSHALDVVRSLCDVAVWLDHGEMKAYGEAGKVVDAYLA
HHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCEEECCCCCHHHHHHHH
DVNERERAEFEERLHSEDDDQIRESRMRRGSREVEITRVQLLDAQGRERITFRTHEPLTI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEECCCEEE
RIHYLAHQRIERPVFGVGINHESGPWLTGPNTGFDKYHIPFIEGAGIIDYHIPRLPFLGG
EEEEEHHHHHCCCEEEEECCCCCCCEECCCCCCCCCEECCEECCCCEEEECCCCCCCCCC
RYLVSASATDSTQLYEFDVHDRMYPLVIHSDGLSQRYGMVFCEGNWSWHG
EEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
SVVIEFDKVSRQFVRRQNASTIQERFMGLIRGLPPAEAFWAVRDVSFAVEEGQSIGLVG
EEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEE
HNGAGKSTILKLMTRVLEPTSGRVTTQGRIAALLELGSGFHPELSGRENVFLYGSLMGFG
CCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHCC
RKEMQRKLPEIIEFSEIGPFLDTEVKHYSSGMYTRLAFAVATAVDPDILITDEVLAVGDE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECHHHHCCCH
TFQRKCIDRIYGFRRAGKTIVFVSHALDVVRSLCDVAVWLDHGEMKAYGEAGKVVDAYLA
HHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCEEECCCCCHHHHHHHH
DVNERERAEFEERLHSEDDDQIRESRMRRGSREVEITRVQLLDAQGRERITFRTHEPLTI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEECCCEEE
RIHYLAHQRIERPVFGVGINHESGPWLTGPNTGFDKYHIPFIEGAGIIDYHIPRLPFLGG
EEEEEHHHHHCCCEEEEECCCCCCCEECCCCCCCCCEECCEECCCCEEEECCCCCCCCCC
RYLVSASATDSTQLYEFDVHDRMYPLVIHSDGLSQRYGMVFCEGNWSWHG
EEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]