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The map label for this gene is nodB [H]

Identifier: 222525038

GI number: 222525038

Start: 2241934

End: 2242650

Strand: Direct

Name: nodB [H]

Synonym: Chy400_1774

Alternate gene names: 222525038

Gene position: 2241934-2242650 (Clockwise)

Preceding gene: 222525037

Following gene: 222525039

Centisome position: 42.55

GC content: 54.53

Gene sequence:

>717_bases
ATGAATGTACGTGCGGTGGTTAGTAAAACTATCGATCAGGTTGGGAATGTGTTGTTAAGTCCACCGTATGGTGGGTTTGG
CTACTACTATAATCACGGGCCGCGTACCCGGCGGGCGGTTGCTTTTACCTTTGATGATGGGCCGTCGCGCCCGTGTACCG
AATGGCTGCTTGATACTCTGGGTGAACTTGGCGTGAAGGCGACATTTTTCTGTGTTGGCCTCAGCGTACAATGGCATCCC
GAAGTGGTGCAGCGGGCGTTTGCTGAAGGGCACGTGATCGGCAACCATTCGATGATGCACAGCCGTAAAGCAGGTTTGAT
GCTACGGGGTGGTGCGCATATCGATGAGGCGACGACGGCGATCTCCCAGGTTATCGGTCTGCGACCACGCCTCTACCGGC
CACCGTGGGGGTGGTTGACACCATGGGAAGGGCAGCGTTTGCATCAGCGTGGCTATGCGGTGATCGGTTGGGATATTTAT
CCTGACGATTGGAAGGTGCCGGAAGTCCCTGCAGAACGTTTAGTTGCCCAGATCAAGCCATTGATCAAACCCGGCTCGAT
TATCTTGATGCACGACTCAGTCTCGAATCAGATTCGTTGGGAAAAGACAGAGACGGCACGGGCTGTGCGTTTATTGACTC
CATGGCTCCGTGATGAGGGGTATGAGATTGTAACGATCCCGGATTTACTGGGTCTACCGGCGTATGCCAGGGTGTAG

Upstream 100 bases:

>100_bases
ACGTGCACTGCTTGGCGCCCGGCTCTATGATCGCTTGTTCCGTCGTCAGCCATCGGTTACTTCTGAGCAGACAATGGCAT
CGGCTTAACCGGGGATTGCT

Downstream 100 bases:

>100_bases
GCAGTGTGGATTTCTACGTCAGAATATCCGGTATGAGAGTTTACATAACGTCCTGATGCGACGAGGGCGTTAGTAGGGGG
AGGGGATGAGTTTGCCGACG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNVRAVVSKTIDQVGNVLLSPPYGGFGYYYNHGPRTRRAVAFTFDDGPSRPCTEWLLDTLGELGVKATFFCVGLSVQWHP
EVVQRAFAEGHVIGNHSMMHSRKAGLMLRGGAHIDEATTAISQVIGLRPRLYRPPWGWLTPWEGQRLHQRGYAVIGWDIY
PDDWKVPEVPAERLVAQIKPLIKPGSIILMHDSVSNQIRWEKTETARAVRLLTPWLRDEGYEIVTIPDLLGLPAYARV

Sequences:

>Translated_238_residues
MNVRAVVSKTIDQVGNVLLSPPYGGFGYYYNHGPRTRRAVAFTFDDGPSRPCTEWLLDTLGELGVKATFFCVGLSVQWHP
EVVQRAFAEGHVIGNHSMMHSRKAGLMLRGGAHIDEATTAISQVIGLRPRLYRPPWGWLTPWEGQRLHQRGYAVIGWDIY
PDDWKVPEVPAERLVAQIKPLIKPGSIILMHDSVSNQIRWEKTETARAVRLLTPWLRDEGYEIVTIPDLLGLPAYARV
>Mature_238_residues
MNVRAVVSKTIDQVGNVLLSPPYGGFGYYYNHGPRTRRAVAFTFDDGPSRPCTEWLLDTLGELGVKATFFCVGLSVQWHP
EVVQRAFAEGHVIGNHSMMHSRKAGLMLRGGAHIDEATTAISQVIGLRPRLYRPPWGWLTPWEGQRLHQRGYAVIGWDIY
PDDWKVPEVPAERLVAQIKPLIKPGSIILMHDSVSNQIRWEKTETARAVRLLTPWLRDEGYEIVTIPDLLGLPAYARV

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323338, Length=156, Percent_Identity=30.7692307692308, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26833; Mature: 26833

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVRAVVSKTIDQVGNVLLSPPYGGFGYYYNHGPRTRRAVAFTFDDGPSRPCTEWLLDTL
CCHHHHHHHHHHHHCCEEECCCCCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHH
GELGVKATFFCVGLSVQWHPEVVQRAFAEGHVIGNHSMMHSRKAGLMLRGGAHIDEATTA
HHHCCEEEEEEEECCEEECHHHHHHHHHCCEEECCCHHHHHHCCCEEEECCCCCHHHHHH
ISQVIGLRPRLYRPPWGWLTPWEGQRLHQRGYAVIGWDIYPDDWKVPEVPAERLVAQIKP
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
LIKPGSIILMHDSVSNQIRWEKTETARAVRLLTPWLRDEGYEIVTIPDLLGLPAYARV
CCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHCC
>Mature Secondary Structure
MNVRAVVSKTIDQVGNVLLSPPYGGFGYYYNHGPRTRRAVAFTFDDGPSRPCTEWLLDTL
CCHHHHHHHHHHHHCCEEECCCCCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHH
GELGVKATFFCVGLSVQWHPEVVQRAFAEGHVIGNHSMMHSRKAGLMLRGGAHIDEATTA
HHHCCEEEEEEEECCEEECHHHHHHHHHCCEEECCCHHHHHHCCCEEEECCCCCHHHHHH
ISQVIGLRPRLYRPPWGWLTPWEGQRLHQRGYAVIGWDIYPDDWKVPEVPAERLVAQIKP
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
LIKPGSIILMHDSVSNQIRWEKTETARAVRLLTPWLRDEGYEIVTIPDLLGLPAYARV
CCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]