| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is ydcP [H]
Identifier: 222524674
GI number: 222524674
Start: 1782411
End: 1784912
Strand: Reverse
Name: ydcP [H]
Synonym: Chy400_1401
Alternate gene names: 222524674
Gene position: 1784912-1782411 (Counterclockwise)
Preceding gene: 222524675
Following gene: 222524673
Centisome position: 33.88
GC content: 59.15
Gene sequence:
>2502_bases ATGCGCAAACCTGAAATAATGAGTCCAGCCGGTTACTGGCCACAACTGTATGCTGCCATTGAAGCCGGCGCGGATGCGGT CTATTTTGGATTAACCCATTTTACGGCGCGGGCCAAGGTAGGCTTTACCCGCAGCGAATTACCTGACGTGATGAAGACGC TTCATCGGCGCGGCGTGAAGGGGTATGTCACCTTTAACACGCTGGTGTTCGATCACGAGATACGGGCTGCCGCAAATGCT CTGGCCGAGATTGCCGCTGCTGGTGCCGATGCGATCATTGTGCAAGACCTCGGCATTGCGGCTCTTGCGCACCGGATTGC GCCTGATCTTCCCATTCATGGTAGTACGCAGATGAGTATTACCAGCGCAGAAGGTGTTGAACTGGCGGCTCGCTACGGTG TGTCGCGGGTTGTACTGGCGCGCGAATTATCGCTGGCAGAGGTGGCCGCGATCCGTGCCCGCAGCCCTATCGAGCTGGAG ATCTTTGTCCACGGTGCGCTCTGTGTCTCGTACTCCGGTCAGTGCTTTTCCTCGGAGGCATGGGGAGGGCGCAGCGCCAA TCGTGGTCAGTGTGCGCAGGCCTGCCGGTTGCCGTATGAGATGATTGTCGATGGTGAGCACCGACCACTGGGTGCAGCTC GTTATCTCCTCTCGCCGGGTGATCTGGCGGCAATTGATGATATGGCAACCATTGCGCGCCTGGGTGTCAGTGCGCTTAAG ATTGAAGGTCGCTACAAAGATGCTGAATATGTTGCGATTACGACGAATGCCTATCGCCGGGCGCTCGATGCGGCATGGGC AGGTTTGCCGTCCGATCTGACCGGGGCTGATCGGCTGCATCTTGAGCAGGTGTATTCGCGTGGTCTGGGGCCTCATTTCC TGCGGGGGACCAATCATCAGGCAGTTGTTGAAGGACGGGCACCACGCCATCGTGGTCTCCTGATGGGGCGCGTCGTACAG GTACGGTCGGATGCGATCATCATTACGCCGGAGCCGGGGCGTGAGGCAGCGCCACTGAAACCCGGTGATGGTGTCGTTTT CGATGCCGCCGACTGGCGTAGTCCAGAGGAGCCGGAAGAGGGTGGCCGGATCGTCGCCGTCGAACCGGTAGGTGATGGCC GGCTGGCAATCCGGTTTATGAAGGGGGTGATCAATCCGCGCCGGATTCGGGTCGGTGATCTGCTCTGGCGCACGTCTGAT CCGCAGACCGAACGGATTGCTCGCCCCTTCGTCCAACCGGCGGCGCCGGTGCGCCGGCAACCGGTGCGTGTTCACGTCCA GGCATCCGCCGGTACGGCTCTGGAAATGAGGTGGACGCTCATCGATCAGCCGGCATTGTCGGTCGTTGTGCGGAGTGAGA CATCGCTCACAACTGCGCAAAACCGACCGCTTGATGAAGCAACGTTACGTGATCAACTCAGTCGACTGGGGGATACGCCC TACATTCTGAGCGAACTTTCGGCGGTGATTGAAGGCAATCCCTTCGTACCGGTATCACTGCTCAACCAGTTACGCCGTCA GGCAACGACGCAACTCGCCGAATTGCAGAGTCAACCACCCGCGTTGACCATTCTTAATCCCGATCAGGTGGTAGATGAAG CCCTGGCCGCAGTAGAACCGACCGCACCGTCGGCAACACCGCACCTGCACCTGTTGGTGCGTTCGCCCGAACAGCTCGCG GCAGCGATTGCCCTGCGCCCTGATAGCATCACGCTCGACTACCTTGATCTTGAGGGATTGAAGCCGGCGCTGGCTCAGAT TCGTGACGCCGGTATTCCCGCCCGGATCGCCGCCCCACGTGTGCTCAAGCCCGAAGATGAGCGGATCGTGCGGTTTCTGC GCAAACTACAAACCCCGTTGCTGGTACGCTCAACCGGCTTGCTCGAACTGCTGCGCGATGATCCGACCGTAGCGTTAACT GGCGATTTCAGCCTGAACGCCGCAAATGTCCTGACCGCCGATCTGCTGCTGAAACTGGGATTGCAACGATTAACACCCAC CCATGATCTCAACGCCGAACAGATCGCGCATCTGGCGGAGCGGATTGGCGGGAGCCGGATTGAGGTGATCGCCTACCACC ATCTTCCGGTCTTCCACACCGAACATTGCGTCTTCTGTCGGTTTCTGTCGAATGGTACCAGCTATAAAGACTGTGGTCGG CCCTGCGAACGGCATCACGTGGCATTACGCGATACAAATGGACGAGAACATCCGGTGATTGCTGATGTCGGTTGTCGCAA TACTGTGTTCGGTGCCGAGGCGCAGGAAGCCAGTAAATACCTTGATCGCTGGCGGGCTGCCGGGATCGGGCACTACCGCC TGGAATTCGTTCACGAGTCGGCGGCGCAGGTCACTGCTATCAGCGAGGCATTTCGGGCATATCTCCACAACACGATCAGC GCAGCCGAGCTAGGCCGTCGCTTACGCCAGTGCTCACCGCAGGGCGTGACGGAGGGGAGCTTCTTCGTACCGGCAAACTA TCAGTACATTCCACTACAGTAG
Upstream 100 bases:
>100_bases GCACCTCACCGACTATTGGTTGCACACTGTGTGTCCTGTGCTCGTTGCCCGTCTTGAATTGAGCACAGGATCAATTCCAC ACCCACAAGAGAGACGTGCT
Downstream 100 bases:
>100_bases AGAGGATACGCTCATGGTCGCGAGTTTGTGGGATCAACTGGCCCGGCGCCTGGTTGATGCACTCGGCGCCCAACGCAGTG AGCTGATTGAGGTTCGTGAC
Product: peptidase U32
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MRKPEIMSPAGYWPQLYAAIEAGADAVYFGLTHFTARAKVGFTRSELPDVMKTLHRRGVKGYVTFNTLVFDHEIRAAANA LAEIAAAGADAIIVQDLGIAALAHRIAPDLPIHGSTQMSITSAEGVELAARYGVSRVVLARELSLAEVAAIRARSPIELE IFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYEMIVDGEHRPLGAARYLLSPGDLAAIDDMATIARLGVSALK IEGRYKDAEYVAITTNAYRRALDAAWAGLPSDLTGADRLHLEQVYSRGLGPHFLRGTNHQAVVEGRAPRHRGLLMGRVVQ VRSDAIIITPEPGREAAPLKPGDGVVFDAADWRSPEEPEEGGRIVAVEPVGDGRLAIRFMKGVINPRRIRVGDLLWRTSD PQTERIARPFVQPAAPVRRQPVRVHVQASAGTALEMRWTLIDQPALSVVVRSETSLTTAQNRPLDEATLRDQLSRLGDTP YILSELSAVIEGNPFVPVSLLNQLRRQATTQLAELQSQPPALTILNPDQVVDEALAAVEPTAPSATPHLHLLVRSPEQLA AAIALRPDSITLDYLDLEGLKPALAQIRDAGIPARIAAPRVLKPEDERIVRFLRKLQTPLLVRSTGLLELLRDDPTVALT GDFSLNAANVLTADLLLKLGLQRLTPTHDLNAEQIAHLAERIGGSRIEVIAYHHLPVFHTEHCVFCRFLSNGTSYKDCGR PCERHHVALRDTNGREHPVIADVGCRNTVFGAEAQEASKYLDRWRAAGIGHYRLEFVHESAAQVTAISEAFRAYLHNTIS AAELGRRLRQCSPQGVTEGSFFVPANYQYIPLQ
Sequences:
>Translated_833_residues MRKPEIMSPAGYWPQLYAAIEAGADAVYFGLTHFTARAKVGFTRSELPDVMKTLHRRGVKGYVTFNTLVFDHEIRAAANA LAEIAAAGADAIIVQDLGIAALAHRIAPDLPIHGSTQMSITSAEGVELAARYGVSRVVLARELSLAEVAAIRARSPIELE IFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYEMIVDGEHRPLGAARYLLSPGDLAAIDDMATIARLGVSALK IEGRYKDAEYVAITTNAYRRALDAAWAGLPSDLTGADRLHLEQVYSRGLGPHFLRGTNHQAVVEGRAPRHRGLLMGRVVQ VRSDAIIITPEPGREAAPLKPGDGVVFDAADWRSPEEPEEGGRIVAVEPVGDGRLAIRFMKGVINPRRIRVGDLLWRTSD PQTERIARPFVQPAAPVRRQPVRVHVQASAGTALEMRWTLIDQPALSVVVRSETSLTTAQNRPLDEATLRDQLSRLGDTP YILSELSAVIEGNPFVPVSLLNQLRRQATTQLAELQSQPPALTILNPDQVVDEALAAVEPTAPSATPHLHLLVRSPEQLA AAIALRPDSITLDYLDLEGLKPALAQIRDAGIPARIAAPRVLKPEDERIVRFLRKLQTPLLVRSTGLLELLRDDPTVALT GDFSLNAANVLTADLLLKLGLQRLTPTHDLNAEQIAHLAERIGGSRIEVIAYHHLPVFHTEHCVFCRFLSNGTSYKDCGR PCERHHVALRDTNGREHPVIADVGCRNTVFGAEAQEASKYLDRWRAAGIGHYRLEFVHESAAQVTAISEAFRAYLHNTIS AAELGRRLRQCSPQGVTEGSFFVPANYQYIPLQ >Mature_833_residues MRKPEIMSPAGYWPQLYAAIEAGADAVYFGLTHFTARAKVGFTRSELPDVMKTLHRRGVKGYVTFNTLVFDHEIRAAANA LAEIAAAGADAIIVQDLGIAALAHRIAPDLPIHGSTQMSITSAEGVELAARYGVSRVVLARELSLAEVAAIRARSPIELE IFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYEMIVDGEHRPLGAARYLLSPGDLAAIDDMATIARLGVSALK IEGRYKDAEYVAITTNAYRRALDAAWAGLPSDLTGADRLHLEQVYSRGLGPHFLRGTNHQAVVEGRAPRHRGLLMGRVVQ VRSDAIIITPEPGREAAPLKPGDGVVFDAADWRSPEEPEEGGRIVAVEPVGDGRLAIRFMKGVINPRRIRVGDLLWRTSD PQTERIARPFVQPAAPVRRQPVRVHVQASAGTALEMRWTLIDQPALSVVVRSETSLTTAQNRPLDEATLRDQLSRLGDTP YILSELSAVIEGNPFVPVSLLNQLRRQATTQLAELQSQPPALTILNPDQVVDEALAAVEPTAPSATPHLHLLVRSPEQLA AAIALRPDSITLDYLDLEGLKPALAQIRDAGIPARIAAPRVLKPEDERIVRFLRKLQTPLLVRSTGLLELLRDDPTVALT GDFSLNAANVLTADLLLKLGLQRLTPTHDLNAEQIAHLAERIGGSRIEVIAYHHLPVFHTEHCVFCRFLSNGTSYKDCGR PCERHHVALRDTNGREHPVIADVGCRNTVFGAEAQEASKYLDRWRAAGIGHYRLEFVHESAAQVTAISEAFRAYLHNTIS AAELGRRLRQCSPQGVTEGSFFVPANYQYIPLQ
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=515, Percent_Identity=32.621359223301, Blast_Score=231, Evalue=1e-61, Organism=Escherichia coli, GI1788397, Length=347, Percent_Identity=32.2766570605187, Blast_Score=154, Evalue=3e-38, Organism=Escherichia coli, GI1789548, Length=295, Percent_Identity=31.5254237288136, Blast_Score=118, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020988 - InterPro: IPR001539 [H]
Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 90964; Mature: 90964
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKPEIMSPAGYWPQLYAAIEAGADAVYFGLTHFTARAKVGFTRSELPDVMKTLHRRGVK CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC GYVTFNTLVFDHEIRAAANALAEIAAAGADAIIVQDLGIAALAHRIAPDLPIHGSTQMSI EEEEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCEEEE TSAEGVELAARYGVSRVVLARELSLAEVAAIRARSPIELEIFVHGALCVSYSGQCFSSEA ECCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCEECCCC WGGRSANRGQCAQACRLPYEMIVDGEHRPLGAARYLLSPGDLAAIDDMATIARLGVSALK CCCCCCCCCHHHHHHCCCCEEEECCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCEEEE IEGRYKDAEYVAITTNAYRRALDAAWAGLPSDLTGADRLHLEQVYSRGLGPHFLRGTNHQ EECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCC AVVEGRAPRHRGLLMGRVVQVRSDAIIITPEPGREAAPLKPGDGVVFDAADWRSPEEPEE EEEECCCCHHHCHHHHHHEEECCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC GGRIVAVEPVGDGRLAIRFMKGVINPRRIRVGDLLWRTSDPQTERIARPFVQPAAPVRRQ CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEHEEEECCCCCHHHHHHHHCCCCCCCCCC PVRVHVQASAGTALEMRWTLIDQPALSVVVRSETSLTTAQNRPLDEATLRDQLSRLGDTP CEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHCCCCH YILSELSAVIEGNPFVPVSLLNQLRRQATTQLAELQSQPPALTILNPDQVVDEALAAVEP HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC TAPSATPHLHLLVRSPEQLAAAIALRPDSITLDYLDLEGLKPALAQIRDAGIPARIAAPR CCCCCCCEEEEEEECHHHHHHEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCHHHCCCC VLKPEDERIVRFLRKLQTPLLVRSTGLLELLRDDPTVALTGDFSLNAANVLTADLLLKLG CCCCCHHHHHHHHHHHCCCEEEECCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH LQRLTPTHDLNAEQIAHLAERIGGSRIEVIAYHHLPVFHTEHCVFCRFLSNGTSYKDCGR HHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCEEECCHHEEEHHHCCCCCHHHHCC PCERHHVALRDTNGREHPVIADVGCRNTVFGAEAQEASKYLDRWRAAGIGHYRLEFVHES CHHHCEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHH AAQVTAISEAFRAYLHNTISAAELGRRLRQCSPQGVTEGSFFVPANYQYIPLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEECCC >Mature Secondary Structure MRKPEIMSPAGYWPQLYAAIEAGADAVYFGLTHFTARAKVGFTRSELPDVMKTLHRRGVK CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC GYVTFNTLVFDHEIRAAANALAEIAAAGADAIIVQDLGIAALAHRIAPDLPIHGSTQMSI EEEEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCEEEE TSAEGVELAARYGVSRVVLARELSLAEVAAIRARSPIELEIFVHGALCVSYSGQCFSSEA ECCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCEECCCC WGGRSANRGQCAQACRLPYEMIVDGEHRPLGAARYLLSPGDLAAIDDMATIARLGVSALK CCCCCCCCCHHHHHHCCCCEEEECCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCEEEE IEGRYKDAEYVAITTNAYRRALDAAWAGLPSDLTGADRLHLEQVYSRGLGPHFLRGTNHQ EECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCC AVVEGRAPRHRGLLMGRVVQVRSDAIIITPEPGREAAPLKPGDGVVFDAADWRSPEEPEE EEEECCCCHHHCHHHHHHEEECCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC GGRIVAVEPVGDGRLAIRFMKGVINPRRIRVGDLLWRTSDPQTERIARPFVQPAAPVRRQ CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEHEEEECCCCCHHHHHHHHCCCCCCCCCC PVRVHVQASAGTALEMRWTLIDQPALSVVVRSETSLTTAQNRPLDEATLRDQLSRLGDTP CEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHCCCCH YILSELSAVIEGNPFVPVSLLNQLRRQATTQLAELQSQPPALTILNPDQVVDEALAAVEP HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC TAPSATPHLHLLVRSPEQLAAAIALRPDSITLDYLDLEGLKPALAQIRDAGIPARIAAPR CCCCCCCEEEEEEECHHHHHHEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCHHHCCCC VLKPEDERIVRFLRKLQTPLLVRSTGLLELLRDDPTVALTGDFSLNAANVLTADLLLKLG CCCCCHHHHHHHHHHHCCCEEEECCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH LQRLTPTHDLNAEQIAHLAERIGGSRIEVIAYHHLPVFHTEHCVFCRFLSNGTSYKDCGR HHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCEEECCHHEEEHHHCCCCCHHHHCC PCERHHVALRDTNGREHPVIADVGCRNTVFGAEAQEASKYLDRWRAAGIGHYRLEFVHES CHHHCEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHH AAQVTAISEAFRAYLHNTISAAELGRRLRQCSPQGVTEGSFFVPANYQYIPLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]