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The map label for this gene is yliC [C]

Identifier: 222524541

GI number: 222524541

Start: 1610606

End: 1611610

Strand: Reverse

Name: yliC [C]

Synonym: Chy400_1265

Alternate gene names: 222524541

Gene position: 1611610-1610606 (Counterclockwise)

Preceding gene: 222524542

Following gene: 222524540

Centisome position: 30.59

GC content: 49.45

Gene sequence:

>1005_bases
TTGAAAGGGTACATCAGATATTTTCTCAACAAACTCGGTTGGTTTGTAATCACCTTTGTCTTTGCCTTCGTCCTGAATTT
TACGTTGCCTCGTCTAATGCCAGGTGATCCGGTTGCCGCAATCGTGGCACGGCAGGCGCAAGGCATCAGCAATCCAACCG
GTGTGCAGGCAATCTATCAGCAATATACTGAGCTGTTTGGCACCGATAAGCCGATTATCGAGCAGTTTTTTATTTACGTA
CGCAATGTGTTTCGGGGTGACTTCGGGTTTTCATTTAGTCAGTATCCACGCACAGTGGCCGAGGTGATTGGTTCGTCGAT
TGGGTGGACACTGATCTTGCAGTTTCCAGCCATCCTTGTTGGCTGGATTTTAGGAAACTTGCTCGGTGCCATGGCTGCCT
ATCTCCGGGGCGGCTTTGATAAGGTACTCATGCCCTCTGCACTCTTCTTGAGCAGCTTTCCGGCTTTTGGGATGGCAGTG
ATTTTACTGGTGATCTTTGCGGTGTATTTGAAGTGGTTTCCCACTTCGGGAGGCTACGGCTATACGCTTATTCCTGGCCT
GACACCAACGTTTCTATGGTCAGCTTTTATCCACTACCAGCTACCCTTCTGGTCGATTGTGTTGATTGCCATCGGCGGGC
AGGCAATTGGCATGCGTTCGATGTCAATTTATGAACTGAATGCGGATTACGTGAAATTCGCTCGCTTCATGGGAATCAAA
GACGACAAGATTGTCACTTATGTCTTTCGCAACGCCATGTTGCCACAGGTAACCGGTCTGGCATTGTCACTCGGCACGAT
GGTGGGCGGTGCGCTGATTGCGGAGATCGTCTTTAGCTATCCGGGTCTTGGTACAACGCTCCTGAATGCCGTTATGGGGC
AGGATTACCCGCTCATCTCTGCGGCAACCTTGATCATCACATTTATGGTATTGACCGCCAACTTTATCCTCGAAATTTTA
TATGGCGTGATCGACCCGCGTATAAAGGCGGCTCAGTCTGATTGA

Upstream 100 bases:

>100_bases
CATTTTGGATGTAGGGTCTTGTTCTGGAAGATGGTTCTCCGGAATACGGCTTCGCTCTGAGCAAGCCGGTGGGGATTGAC
AAACGGAAGGCAGGGTTGCG

Downstream 100 bases:

>100_bases
GAGGATAAGTGCTTATGCAACACACACTTCGACAGGTTTTTCGCTCTGGTAAGTTTGTGGTGGGATTCACTATCCTGATG
ACAATCCTCCTGATTGTCAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKGYIRYFLNKLGWFVITFVFAFVLNFTLPRLMPGDPVAAIVARQAQGISNPTGVQAIYQQYTELFGTDKPIIEQFFIYV
RNVFRGDFGFSFSQYPRTVAEVIGSSIGWTLILQFPAILVGWILGNLLGAMAAYLRGGFDKVLMPSALFLSSFPAFGMAV
ILLVIFAVYLKWFPTSGGYGYTLIPGLTPTFLWSAFIHYQLPFWSIVLIAIGGQAIGMRSMSIYELNADYVKFARFMGIK
DDKIVTYVFRNAMLPQVTGLALSLGTMVGGALIAEIVFSYPGLGTTLLNAVMGQDYPLISAATLIITFMVLTANFILEIL
YGVIDPRIKAAQSD

Sequences:

>Translated_334_residues
MKGYIRYFLNKLGWFVITFVFAFVLNFTLPRLMPGDPVAAIVARQAQGISNPTGVQAIYQQYTELFGTDKPIIEQFFIYV
RNVFRGDFGFSFSQYPRTVAEVIGSSIGWTLILQFPAILVGWILGNLLGAMAAYLRGGFDKVLMPSALFLSSFPAFGMAV
ILLVIFAVYLKWFPTSGGYGYTLIPGLTPTFLWSAFIHYQLPFWSIVLIAIGGQAIGMRSMSIYELNADYVKFARFMGIK
DDKIVTYVFRNAMLPQVTGLALSLGTMVGGALIAEIVFSYPGLGTTLLNAVMGQDYPLISAATLIITFMVLTANFILEIL
YGVIDPRIKAAQSD
>Mature_334_residues
MKGYIRYFLNKLGWFVITFVFAFVLNFTLPRLMPGDPVAAIVARQAQGISNPTGVQAIYQQYTELFGTDKPIIEQFFIYV
RNVFRGDFGFSFSQYPRTVAEVIGSSIGWTLILQFPAILVGWILGNLLGAMAAYLRGGFDKVLMPSALFLSSFPAFGMAV
ILLVIFAVYLKWFPTSGGYGYTLIPGLTPTFLWSAFIHYQLPFWSIVLIAIGGQAIGMRSMSIYELNADYVKFARFMGIK
DDKIVTYVFRNAMLPQVTGLALSLGTMVGGALIAEIVFSYPGLGTTLLNAVMGQDYPLISAATLIITFMVLTANFILEIL
YGVIDPRIKAAQSD

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=327, Percent_Identity=30.5810397553517, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789965, Length=351, Percent_Identity=30.4843304843305, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=27.2727272727273, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=25.3822629969419, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787761, Length=340, Percent_Identity=28.8235294117647, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788504, Length=317, Percent_Identity=27.4447949526814, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787550, Length=258, Percent_Identity=30.6201550387597, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36902; Mature: 36902

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYIRYFLNKLGWFVITFVFAFVLNFTLPRLMPGDPVAAIVARQAQGISNPTGVQAIYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
QYTELFGTDKPIIEQFFIYVRNVFRGDFGFSFSQYPRTVAEVIGSSIGWTLILQFPAILV
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GWILGNLLGAMAAYLRGGFDKVLMPSALFLSSFPAFGMAVILLVIFAVYLKWFPTSGGYG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
YTLIPGLTPTFLWSAFIHYQLPFWSIVLIAIGGQAIGMRSMSIYELNADYVKFARFMGIK
EEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCEEEECCHHHHHHHHHHCCC
DDKIVTYVFRNAMLPQVTGLALSLGTMVGGALIAEIVFSYPGLGTTLLNAVMGQDYPLIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHH
AATLIITFMVLTANFILEILYGVIDPRIKAAQSD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MKGYIRYFLNKLGWFVITFVFAFVLNFTLPRLMPGDPVAAIVARQAQGISNPTGVQAIYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
QYTELFGTDKPIIEQFFIYVRNVFRGDFGFSFSQYPRTVAEVIGSSIGWTLILQFPAILV
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GWILGNLLGAMAAYLRGGFDKVLMPSALFLSSFPAFGMAVILLVIFAVYLKWFPTSGGYG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
YTLIPGLTPTFLWSAFIHYQLPFWSIVLIAIGGQAIGMRSMSIYELNADYVKFARFMGIK
EEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCEEEECCHHHHHHHHHHCCC
DDKIVTYVFRNAMLPQVTGLALSLGTMVGGALIAEIVFSYPGLGTTLLNAVMGQDYPLIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHH
AATLIITFMVLTANFILEILYGVIDPRIKAAQSD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA