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The map label for this gene is ideR [H]

Identifier: 222524512

GI number: 222524512

Start: 1571834

End: 1572556

Strand: Reverse

Name: ideR [H]

Synonym: Chy400_1236

Alternate gene names: 222524512

Gene position: 1572556-1571834 (Counterclockwise)

Preceding gene: 222524515

Following gene: 222524511

Centisome position: 29.85

GC content: 52.97

Gene sequence:

>723_bases
GTGAATACTTCGCATTCTACCACAACCTTACGGCGCCGTCACACCAGTAGCGGTAGTGAACCGACGGCCAAAGAGCGCGA
ATATCTTGAGGTTATCTATTATCTGGCATCCCGTAACGAACCGGTTATTGCAGCCCGTCTGGCGCGTTGGATGAAGGTAC
AGCCACCTACCGTAACCCATATTGTTTCTCGTTTGCTTGAAAAGGGTTTGATCGAACGCAACGCCCATGGCGAGATTACA
CTCACCGCAACGGGTTTTCAGTTGGCCGAAGCAATGGTGCGTCGTCACCGAATCCTGGAGCGTTTCCTCGTTGATGTCAT
GGGATTGCCCTGGCATCTGATTCACGAGGAAGCCGTTCGTTTGGAACATGCCCTTTCGCCGGTGATGGAAGAGCGGATTA
TGGCGCTGGTCGGCCATGCAACGACCTGTCCACATGGTAATCCTATTCCAGGACAAAATGAAGTGTATACCGGGAATACC
CGCATGGATACAGTCCAACCCGGGCAACAGTTCAGAATACGGCGGATTGCAGAAGAGGCCGAAGAAGAAACGCCGATTGT
CTCCTTCCTTGAGGCGAATGGGCTGGTACCGGGAGCTATCTTTACCGTTGCCGATAATACGGCGGCAATCGGGGTCACCC
TTCAGCGACCGGGTTTATCGATTACTGTTCCGGCGCACATTGCTGAGATGATTTGGGGTGATGTTGAGACCTCTGCGCAA
TAG

Upstream 100 bases:

>100_bases
CCATCTGTCGCACACTCTTGCCGTCTGCTATAATGAGGGTTAGCATACGTTCATCTTGTTGCAACCCACCAGCAACACTG
CTGACGAAAAGGAGGCAGGA

Downstream 100 bases:

>100_bases
GGGGGTACTGCACCTTTGCGAAAACCCGTGCTTCACCAATTGCCGCTTTCTCTGCAAAACTATGCGCAATCTAGCCGCAA
AAGATCGGCGATAATGTAAC

Product: DtxR family iron (metal) dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNTSHSTTTLRRRHTSSGSEPTAKEREYLEVIYYLASRNEPVIAARLARWMKVQPPTVTHIVSRLLEKGLIERNAHGEIT
LTATGFQLAEAMVRRHRILERFLVDVMGLPWHLIHEEAVRLEHALSPVMEERIMALVGHATTCPHGNPIPGQNEVYTGNT
RMDTVQPGQQFRIRRIAEEAEEETPIVSFLEANGLVPGAIFTVADNTAAIGVTLQRPGLSITVPAHIAEMIWGDVETSAQ

Sequences:

>Translated_240_residues
MNTSHSTTTLRRRHTSSGSEPTAKEREYLEVIYYLASRNEPVIAARLARWMKVQPPTVTHIVSRLLEKGLIERNAHGEIT
LTATGFQLAEAMVRRHRILERFLVDVMGLPWHLIHEEAVRLEHALSPVMEERIMALVGHATTCPHGNPIPGQNEVYTGNT
RMDTVQPGQQFRIRRIAEEAEEETPIVSFLEANGLVPGAIFTVADNTAAIGVTLQRPGLSITVPAHIAEMIWGDVETSAQ
>Mature_240_residues
MNTSHSTTTLRRRHTSSGSEPTAKEREYLEVIYYLASRNEPVIAARLARWMKVQPPTVTHIVSRLLEKGLIERNAHGEIT
LTATGFQLAEAMVRRHRILERFLVDVMGLPWHLIHEEAVRLEHALSPVMEERIMALVGHATTCPHGNPIPGQNEVYTGNT
RMDTVQPGQQFRIRRIAEEAEEETPIVSFLEANGLVPGAIFTVADNTAAIGVTLQRPGLSITVPAHIAEMIWGDVETSAQ

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 26735; Mature: 26735

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSHSTTTLRRRHTSSGSEPTAKEREYLEVIYYLASRNEPVIAARLARWMKVQPPTVTH
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHH
IVSRLLEKGLIERNAHGEITLTATGFQLAEAMVRRHRILERFLVDVMGLPWHLIHEEAVR
HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LEHALSPVMEERIMALVGHATTCPHGNPIPGQNEVYTGNTRMDTVQPGQQFRIRRIAEEA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
EEETPIVSFLEANGLVPGAIFTVADNTAAIGVTLQRPGLSITVPAHIAEMIWGDVETSAQ
HHCCHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNTSHSTTTLRRRHTSSGSEPTAKEREYLEVIYYLASRNEPVIAARLARWMKVQPPTVTH
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHH
IVSRLLEKGLIERNAHGEITLTATGFQLAEAMVRRHRILERFLVDVMGLPWHLIHEEAVR
HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LEHALSPVMEERIMALVGHATTCPHGNPIPGQNEVYTGNTRMDTVQPGQQFRIRRIAEEA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
EEETPIVSFLEANGLVPGAIFTVADNTAAIGVTLQRPGLSITVPAHIAEMIWGDVETSAQ
HHCCHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]