| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is spoVR [H]
Identifier: 222524334
GI number: 222524334
Start: 1341987
End: 1344311
Strand: Direct
Name: spoVR [H]
Synonym: Chy400_1057
Alternate gene names: 222524334
Gene position: 1341987-1344311 (Clockwise)
Preceding gene: 222524333
Following gene: 222524340
Centisome position: 25.47
GC content: 57.59
Gene sequence:
>2325_bases ATGAAGAGTACCCGCCTTCCCGCTCATCTCGAACAGGCGCGTCAGGAGATCGAGCAAATTGCCCGTGAATACGGCCTCGA TTTCTTTCCCATTATTTACGAAGTGCTCGATTACCGAACGCTCTATGAGACGGCGGCGTTCGGCGGATTTCCGACGCGCT ATCCACACTGGCGCTTCGGCATGGAGTACGATCAGTTGCTGAAAGGGCATGTCTGGGCCGGGAGCACCATTTACGAGATG GTGATTAACAACAACCCGGCGTATGCCTATCTGCTCGAAGGAAATGAAGACGTCACCCAAAAGATGGTGATGGCGCACGT TACCGGGCACGTTGATTTCTTCAAGAATAATATGTGGTTTGCCCATACCAATCGCAAGATGCTCGATACAATGGCAAACC ACGCCGCCCGGATTCAGCGGATTATTGACCGCATTGGTTATGATCCGGTAGAAGAATTCATCGACACCTGTCTGTCGTTA GAGAACCTGATCGACTACCATGCCCCCTACATCCGTCGCCCGGAAGCCGTCACCCCGCGCCCTATCGTGAACGAGGAAGA ACCGCCGGTGGTGGAGGGCTTGCCGGTCGAGCGCGAGTACATGCGAGATTATATCAACCCGCCTGAATTCCTCGAAGCCC AGCGCCGTAAGCTTGAAGAGGAGCGCGCCCGCCAGCGGCGGTTTCCTGAAAACCCGCAGCGCGATGTGTTGCTCTTCCTG ATGAATTTTGCCCCGCTGGAAAGCTGGCAGCATACCGTGCTCGAAATTATTCGCGATGAAGCCTACTACTTCGCGCCGCA AGGGATGACCAAAATCCTCAACGAAGGTTGGGCATGTCTGCACGGCGACAGCCTGATCGTGACCGATCACGGGCTGGTGC CGATGCGCGAGGTCGTGAATCATCGTCAGCGCCTCCAGGTGAGCGATGGCGAACGCCAGCAAACGGTGTACGACTGGAAC CGCTTTGCCGATTACCCGACGGTGACCATGCGTACCCGCGCCGGTTTTACCCTGACCGGTTCACACAACCATCGGATTAT GCTGGCCGATGGTACCTGGCGCCGGCTCGACGAGCTGCAGATCGGTGACCGGGTGCGCATTGCCGGCGGTACCGAACTGT GGGCAACCGAACCGGCACTACTCCGCTGCCGCCGGCCATTACCACGGGTTCTGGTAACGGCTGGAGCACCTGCTGCCACC ACGTCGTCGCCACACCGTCGTGGGTACCGCAGGGCAGCGGCTGTGGTCGTCGATGAAAAGCTGGCAGCGGCAATCGGTCG GCGCTGCGTCACGCACGCCGATCAGCAGGCATTAGACGCCATTCGACGCTCGCCACGTCCGCAAGTCGTTGCGTTCCTCC GCGCCTTCTGCCAGGGTGCCGGACAGTCCGTAGCGAGTGGTCTCACGCTCACCTGCGCGGATGCTGATCTGGCAACTACG GTGCAGTTGCTGCTGACCAATCTGGGTGTGCTGGCCCACCGCACCGACACCACAGTACGCATTGACAATGGTGATGATCT GGAACGCGCCTATACGACCCTGGCGACACCTACAGGTTGGACAGATGAGGTCGTCGCGCTTGAACACGGCACTGCCGATG TCTACGACATCTCGGTGACGGCAACGCATCGCTATGCTGCGCAGGGCTTTATCAACCACAATAGCTACTGGCACAGCACC ATCATGACCCAGCGGGTTGCCTCGGCAGCCGAGATTGTCTCCTTCGCCGACCTGCATTCAGGCGTCGTTGCCACCGGCGG CGGTCGCCTGAACCCTTACAAGCTGGGGCTGGAACTTCTGCGCGATATTGAGGATCGCTGGAACAAGGGCAAATTCGGCA AGGAGTACGAAGAGTGCGACGACATTGCGCTCAAGCGATCCTGGGACAAACAACTCGGTCTGGGCCGCCAAAAGATCTTT GAAGTGCGCCGTCTCTACAATGACGTCACCTTCATCGATGAATTCCTCACCCCGGAATTCGTGATGGAGCAGAAGCTCTT TACCTTCCGCTACAACCGCGATACCGATCTCTACGAAATTGCCTCGCGTGAATTTAAGGAGATCAAAGAGAAGCTGCTCT TCCGGCTCACCAATTTTGGCCAGCCAGTGATCTTTGTCGAAGACGGCAACTACGGCAATCGCGGCGAACTCTATCTGCGT CATCGTCATGAAGGCGTTGATCTCAAGATGGATTATGCCCGCGAGACGATGCGCAACCTGTACAAGATTTGGACGCGCCC CGTCCATCTGGAGACGGTGATTGAAGACAAGCGCCGCCTGCTGTCGTTCGATGGTCGTGATTTTAGCGAACGCCGACTGG ATTAG
Upstream 100 bases:
>100_bases AGTAGTGATTGCCGAAATTGCCGACCGTGACGATATCTATGATGCAATTCGCGCCTTCCTCGGCAAAGGGCGCTGATTGC GTTACCCCTATGGTGTGTGT
Downstream 100 bases:
>100_bases GCGAATCGTTCATTCCTCAGCACAGCCGCCAGGGCGACTATTTGGTCGCCCTGGCGACTATGTTGCGAACCAGGCACTAT CATCCGTGAGTTCTGTAAGC
Product: SpoVR family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 774; Mature: 774
Protein sequence:
>774_residues MKSTRLPAHLEQARQEIEQIAREYGLDFFPIIYEVLDYRTLYETAAFGGFPTRYPHWRFGMEYDQLLKGHVWAGSTIYEM VINNNPAYAYLLEGNEDVTQKMVMAHVTGHVDFFKNNMWFAHTNRKMLDTMANHAARIQRIIDRIGYDPVEEFIDTCLSL ENLIDYHAPYIRRPEAVTPRPIVNEEEPPVVEGLPVEREYMRDYINPPEFLEAQRRKLEEERARQRRFPENPQRDVLLFL MNFAPLESWQHTVLEIIRDEAYYFAPQGMTKILNEGWACLHGDSLIVTDHGLVPMREVVNHRQRLQVSDGERQQTVYDWN RFADYPTVTMRTRAGFTLTGSHNHRIMLADGTWRRLDELQIGDRVRIAGGTELWATEPALLRCRRPLPRVLVTAGAPAAT TSSPHRRGYRRAAAVVVDEKLAAAIGRRCVTHADQQALDAIRRSPRPQVVAFLRAFCQGAGQSVASGLTLTCADADLATT VQLLLTNLGVLAHRTDTTVRIDNGDDLERAYTTLATPTGWTDEVVALEHGTADVYDISVTATHRYAAQGFINHNSYWHST IMTQRVASAAEIVSFADLHSGVVATGGGRLNPYKLGLELLRDIEDRWNKGKFGKEYEECDDIALKRSWDKQLGLGRQKIF EVRRLYNDVTFIDEFLTPEFVMEQKLFTFRYNRDTDLYEIASREFKEIKEKLLFRLTNFGQPVIFVEDGNYGNRGELYLR HRHEGVDLKMDYARETMRNLYKIWTRPVHLETVIEDKRRLLSFDGRDFSERRLD
Sequences:
>Translated_774_residues MKSTRLPAHLEQARQEIEQIAREYGLDFFPIIYEVLDYRTLYETAAFGGFPTRYPHWRFGMEYDQLLKGHVWAGSTIYEM VINNNPAYAYLLEGNEDVTQKMVMAHVTGHVDFFKNNMWFAHTNRKMLDTMANHAARIQRIIDRIGYDPVEEFIDTCLSL ENLIDYHAPYIRRPEAVTPRPIVNEEEPPVVEGLPVEREYMRDYINPPEFLEAQRRKLEEERARQRRFPENPQRDVLLFL MNFAPLESWQHTVLEIIRDEAYYFAPQGMTKILNEGWACLHGDSLIVTDHGLVPMREVVNHRQRLQVSDGERQQTVYDWN RFADYPTVTMRTRAGFTLTGSHNHRIMLADGTWRRLDELQIGDRVRIAGGTELWATEPALLRCRRPLPRVLVTAGAPAAT TSSPHRRGYRRAAAVVVDEKLAAAIGRRCVTHADQQALDAIRRSPRPQVVAFLRAFCQGAGQSVASGLTLTCADADLATT VQLLLTNLGVLAHRTDTTVRIDNGDDLERAYTTLATPTGWTDEVVALEHGTADVYDISVTATHRYAAQGFINHNSYWHST IMTQRVASAAEIVSFADLHSGVVATGGGRLNPYKLGLELLRDIEDRWNKGKFGKEYEECDDIALKRSWDKQLGLGRQKIF EVRRLYNDVTFIDEFLTPEFVMEQKLFTFRYNRDTDLYEIASREFKEIKEKLLFRLTNFGQPVIFVEDGNYGNRGELYLR HRHEGVDLKMDYARETMRNLYKIWTRPVHLETVIEDKRRLLSFDGRDFSERRLD >Mature_774_residues MKSTRLPAHLEQARQEIEQIAREYGLDFFPIIYEVLDYRTLYETAAFGGFPTRYPHWRFGMEYDQLLKGHVWAGSTIYEM VINNNPAYAYLLEGNEDVTQKMVMAHVTGHVDFFKNNMWFAHTNRKMLDTMANHAARIQRIIDRIGYDPVEEFIDTCLSL ENLIDYHAPYIRRPEAVTPRPIVNEEEPPVVEGLPVEREYMRDYINPPEFLEAQRRKLEEERARQRRFPENPQRDVLLFL MNFAPLESWQHTVLEIIRDEAYYFAPQGMTKILNEGWACLHGDSLIVTDHGLVPMREVVNHRQRLQVSDGERQQTVYDWN RFADYPTVTMRTRAGFTLTGSHNHRIMLADGTWRRLDELQIGDRVRIAGGTELWATEPALLRCRRPLPRVLVTAGAPAAT TSSPHRRGYRRAAAVVVDEKLAAAIGRRCVTHADQQALDAIRRSPRPQVVAFLRAFCQGAGQSVASGLTLTCADADLATT VQLLLTNLGVLAHRTDTTVRIDNGDDLERAYTTLATPTGWTDEVVALEHGTADVYDISVTATHRYAAQGFINHNSYWHST IMTQRVASAAEIVSFADLHSGVVATGGGRLNPYKLGLELLRDIEDRWNKGKFGKEYEECDDIALKRSWDKQLGLGRQKIF EVRRLYNDVTFIDEFLTPEFVMEQKLFTFRYNRDTDLYEIASREFKEIKEKLLFRLTNFGQPVIFVEDGNYGNRGELYLR HRHEGVDLKMDYARETMRNLYKIWTRPVHLETVIEDKRRLLSFDGRDFSERRLD
Specific function: Appears to be involved in spore cortex formation [H]
COG id: COG2719
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ycgB [H]
Homologues:
Organism=Escherichia coli, GI1787437, Length=291, Percent_Identity=34.7079037800687, Blast_Score=142, Evalue=8e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007390 [H]
Pfam domain/function: PF04293 SpoVR [H]
EC number: NA
Molecular weight: Translated: 89475; Mature: 89475
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS50817 INTEIN_N_TER ; PS50818 INTEIN_C_TER ; PS00024 HEMOPEXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTRLPAHLEQARQEIEQIAREYGLDFFPIIYEVLDYRTLYETAAFGGFPTRYPHWRFG CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC MEYDQLLKGHVWAGSTIYEMVINNNPAYAYLLEGNEDVTQKMVMAHVTGHVDFFKNNMWF CCHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEE AHTNRKMLDTMANHAARIQRIIDRIGYDPVEEFIDTCLSLENLIDYHAPYIRRPEAVTPR EECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PIVNEEEPPVVEGLPVEREYMRDYINPPEFLEAQRRKLEEERARQRRFPENPQRDVLLFL CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MNFAPLESWQHTVLEIIRDEAYYFAPQGMTKILNEGWACLHGDSLIVTDHGLVPMREVVN HHHCCHHHHHHHHHHHHHHCHHEECCCHHHHHHHCCCEEEECCEEEEECCCCCHHHHHHH HRQRLQVSDGERQQTVYDWNRFADYPTVTMRTRAGFTLTGSHNHRIMLADGTWRRLDELQ HHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEECCCHHHHHHCC IGDRVRIAGGTELWATEPALLRCRRPLPRVLVTAGAPAATTSSPHRRGYRRAAAVVVDEK CCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH LAAAIGRRCVTHADQQALDAIRRSPRPQVVAFLRAFCQGAGQSVASGLTLTCADADLATT HHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCCHHHHH VQLLLTNLGVLAHRTDTTVRIDNGDDLERAYTTLATPTGWTDEVVALEHGTADVYDISVT HHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEE ATHRYAAQGFINHNSYWHSTIMTQRVASAAEIVSFADLHSGVVATGGGRLNPYKLGLELL ECHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHH RDIEDRWNKGKFGKEYEECDDIALKRSWDKQLGLGRQKIFEVRRLYNDVTFIDEFLTPEF HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH VMEQKLFTFRYNRDTDLYEIASREFKEIKEKLLFRLTNFGQPVIFVEDGNYGNRGELYLR HHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEE HRHEGVDLKMDYARETMRNLYKIWTRPVHLETVIEDKRRLLSFDGRDFSERRLD ECCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHCCC >Mature Secondary Structure MKSTRLPAHLEQARQEIEQIAREYGLDFFPIIYEVLDYRTLYETAAFGGFPTRYPHWRFG CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC MEYDQLLKGHVWAGSTIYEMVINNNPAYAYLLEGNEDVTQKMVMAHVTGHVDFFKNNMWF CCHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEE AHTNRKMLDTMANHAARIQRIIDRIGYDPVEEFIDTCLSLENLIDYHAPYIRRPEAVTPR EECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PIVNEEEPPVVEGLPVEREYMRDYINPPEFLEAQRRKLEEERARQRRFPENPQRDVLLFL CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MNFAPLESWQHTVLEIIRDEAYYFAPQGMTKILNEGWACLHGDSLIVTDHGLVPMREVVN HHHCCHHHHHHHHHHHHHHCHHEECCCHHHHHHHCCCEEEECCEEEEECCCCCHHHHHHH HRQRLQVSDGERQQTVYDWNRFADYPTVTMRTRAGFTLTGSHNHRIMLADGTWRRLDELQ HHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEECCCHHHHHHCC IGDRVRIAGGTELWATEPALLRCRRPLPRVLVTAGAPAATTSSPHRRGYRRAAAVVVDEK CCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH LAAAIGRRCVTHADQQALDAIRRSPRPQVVAFLRAFCQGAGQSVASGLTLTCADADLATT HHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCCHHHHH VQLLLTNLGVLAHRTDTTVRIDNGDDLERAYTTLATPTGWTDEVVALEHGTADVYDISVT HHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEE ATHRYAAQGFINHNSYWHSTIMTQRVASAAEIVSFADLHSGVVATGGGRLNPYKLGLELL ECHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHH RDIEDRWNKGKFGKEYEECDDIALKRSWDKQLGLGRQKIFEVRRLYNDVTFIDEFLTPEF HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH VMEQKLFTFRYNRDTDLYEIASREFKEIKEKLLFRLTNFGQPVIFVEDGNYGNRGELYLR HHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEE HRHEGVDLKMDYARETMRNLYKIWTRPVHLETVIEDKRRLLSFDGRDFSERRLD ECCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8144469; 9579061; 9384377 [H]