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The map label for this gene is yfkH [H]

Identifier: 222151855

GI number: 222151855

Start: 1745603

End: 1746631

Strand: Direct

Name: yfkH [H]

Synonym: MCCL_1612

Alternate gene names: 222151855

Gene position: 1745603-1746631 (Clockwise)

Preceding gene: 222151854

Following gene: 222151856

Centisome position: 83.03

GC content: 34.21

Gene sequence:

>1029_bases
ATGTCAAAGGACAATAAGAGTACCTCTAAATTTCTGACTCAGGCTGCAAAAGGTCCTGAGTCTCATAATGTAGAGGTAGA
AAACAAAAATAAGCTCTCTAATAAAAATGAGCAATATGTAGACAATCAAAGATTTAAATCAAAGCAGGCTAAGAAAGATA
ACGAAACATTATATGTTTCTAAGATTAATAAACCGGCAAAGTATAAAAGTGACGGTAATTTTCTAAGTATGTTACTATTT
AGAATTGGTAAAGACGATGCTGCAGGATTATCTGCACAGCTCGCGTATTACTTCTTACTATCTTTATTCCCAATGCTGAT
TTTCTTATTAACATTAGTCCCCTTGTTTAAAGTATCACCTGAAACAATTACGAATATGATCGCAAAGAATGCTCCTGGAG
ATGCAGCAAATATGATTACTGATGTAATCTCTGATGTGATGAACAATGCCAATGGTGGATTACTATCGTTCGGTTTAATT
GCGGCACTTTGGTCAGCATCTAATGGTATGACAGCACTAATGAATGCATTTAATGTATCCTATGAAGTTGAAGATGCCCG
TAATCCTATCGTATCAAAGTTACTTAGTGTGTTATTTACAGTGGTGATGGTGCTTGTATTTGGTGTTGCATTAGCATTAC
CTGTATTCGGTGAACAAATTGGCAATTATTTATTTGGTCAGTTCGGTCTTGAATCACAATTTAAATGGATTTTCTCGCTT
GTTAAAGTCGCACTTCCACTGATTGTTACGTTTATAGTATTCACGACATTATATGCGATTGCACCAAATATTAAACTTCA
ATTTAAATCTGTTATACCAGGTGCTTTGTTTGCAACGATTGTATGGATTGGCGCAAGCTTCCTATTCGGATACTATGTAA
GCAACTTTGGTAACTACTCTAAGACTTATGGTAGTATCGGAGGAATCATCGTCTTAATGTTATGGTTATATTTAACAGGA
TTTATCATTATTATTGGTTCACAGATTAATGCTATAATTCATGAAAAGAAACTAAGTTCTAATCAATAG

Upstream 100 bases:

>100_bases
ACGCGCAATCTTAGATGCTAAAGATACTTTCATCGAAAAGAAAAACCAAAAGAAAATCTCGGGACCAAACGGTTAATTTA
ATATAAGTTGAGGTGAAATC

Downstream 100 bases:

>100_bases
TAATGAAAGAGGGATAACGTTGACTTTATTATCAAACATGCTGGAATTTAATAAGAAGTTTGTTGAAAACAAAGATTATA
CACAATATGAAACATCTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSKDNKSTSKFLTQAAKGPESHNVEVENKNKLSNKNEQYVDNQRFKSKQAKKDNETLYVSKINKPAKYKSDGNFLSMLLF
RIGKDDAAGLSAQLAYYFLLSLFPMLIFLLTLVPLFKVSPETITNMIAKNAPGDAANMITDVISDVMNNANGGLLSFGLI
AALWSASNGMTALMNAFNVSYEVEDARNPIVSKLLSVLFTVVMVLVFGVALALPVFGEQIGNYLFGQFGLESQFKWIFSL
VKVALPLIVTFIVFTTLYAIAPNIKLQFKSVIPGALFATIVWIGASFLFGYYVSNFGNYSKTYGSIGGIIVLMLWLYLTG
FIIIIGSQINAIIHEKKLSSNQ

Sequences:

>Translated_342_residues
MSKDNKSTSKFLTQAAKGPESHNVEVENKNKLSNKNEQYVDNQRFKSKQAKKDNETLYVSKINKPAKYKSDGNFLSMLLF
RIGKDDAAGLSAQLAYYFLLSLFPMLIFLLTLVPLFKVSPETITNMIAKNAPGDAANMITDVISDVMNNANGGLLSFGLI
AALWSASNGMTALMNAFNVSYEVEDARNPIVSKLLSVLFTVVMVLVFGVALALPVFGEQIGNYLFGQFGLESQFKWIFSL
VKVALPLIVTFIVFTTLYAIAPNIKLQFKSVIPGALFATIVWIGASFLFGYYVSNFGNYSKTYGSIGGIIVLMLWLYLTG
FIIIIGSQINAIIHEKKLSSNQ
>Mature_341_residues
SKDNKSTSKFLTQAAKGPESHNVEVENKNKLSNKNEQYVDNQRFKSKQAKKDNETLYVSKINKPAKYKSDGNFLSMLLFR
IGKDDAAGLSAQLAYYFLLSLFPMLIFLLTLVPLFKVSPETITNMIAKNAPGDAANMITDVISDVMNNANGGLLSFGLIA
ALWSASNGMTALMNAFNVSYEVEDARNPIVSKLLSVLFTVVMVLVFGVALALPVFGEQIGNYLFGQFGLESQFKWIFSLV
KVALPLIVTFIVFTTLYAIAPNIKLQFKSVIPGALFATIVWIGASFLFGYYVSNFGNYSKTYGSIGGIIVLMLWLYLTGF
IIIIGSQINAIIHEKKLSSNQ

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=281, Percent_Identity=25.2669039145907, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 37697; Mature: 37565

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDNKSTSKFLTQAAKGPESHNVEVENKNKLSNKNEQYVDNQRFKSKQAKKDNETLYVS
CCCCCHHHHHHHHHHHCCCCCCCCEECCCHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
KINKPAKYKSDGNFLSMLLFRIGKDDAAGLSAQLAYYFLLSLFPMLIFLLTLVPLFKVSP
ECCCCCCCCCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ETITNMIAKNAPGDAANMITDVISDVMNNANGGLLSFGLIAALWSASNGMTALMNAFNVS
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
YEVEDARNPIVSKLLSVLFTVVMVLVFGVALALPVFGEQIGNYLFGQFGLESQFKWIFSL
EEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VKVALPLIVTFIVFTTLYAIAPNIKLQFKSVIPGALFATIVWIGASFLFGYYVSNFGNYS
HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
KTYGSIGGIIVLMLWLYLTGFIIIIGSQINAIIHEKKLSSNQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKDNKSTSKFLTQAAKGPESHNVEVENKNKLSNKNEQYVDNQRFKSKQAKKDNETLYVS
CCCCHHHHHHHHHHHCCCCCCCCEECCCHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
KINKPAKYKSDGNFLSMLLFRIGKDDAAGLSAQLAYYFLLSLFPMLIFLLTLVPLFKVSP
ECCCCCCCCCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ETITNMIAKNAPGDAANMITDVISDVMNNANGGLLSFGLIAALWSASNGMTALMNAFNVS
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
YEVEDARNPIVSKLLSVLFTVVMVLVFGVALALPVFGEQIGNYLFGQFGLESQFKWIFSL
EEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VKVALPLIVTFIVFTTLYAIAPNIKLQFKSVIPGALFATIVWIGASFLFGYYVSNFGNYS
HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
KTYGSIGGIIVLMLWLYLTGFIIIIGSQINAIIHEKKLSSNQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]