Click here to switch to the map view.

The map label for this gene is ydeE [H]

Identifier: 222151403

GI number: 222151403

Start: 1262309

End: 1263226

Strand: Direct

Name: ydeE [H]

Synonym: MCCL_1156

Alternate gene names: 222151403

Gene position: 1262309-1263226 (Clockwise)

Preceding gene: 222151402

Following gene: 222151423

Centisome position: 60.04

GC content: 35.62

Gene sequence:

>918_bases
ATGATAAAGACAAGCAGGAAATGCTACACATCTATGCTATTAACTACGAGATTTAGAAAGTGTGAAATGATGAAATCAAT
TGAAACTGTCCAAAAAACAATCGTATATCTTGAAGATCATTTATTACAGCCATTTACACTTGATGATCTTAGTAATTACC
TTGAAGAGAGTGCATTCCATATTACACAGTCCTTTACCATGATCACAGGAATGACTGTGGAGGAATACCTTCACAGCAGG
AAGATGACAGAAGCTGCAAACTATTTATTGAATGGAAACTATAGACTTGTCGACGTTGCAAAAAAGTACGGCTATACGAG
TGCTCATGAATTCAGTACAGCTTTTAGTGAATTTCATGGAACTTCTCCAATACAAGCACGTGCAAATCCAGAGAAACTCC
AGATGGTTCATCGGCTTTATCTGCAGCTCTCAACAACAACGAAGCCACCCGCGTATTATAGTATAAAACGTGCTGATCAC
ACTGAGTTAGTCGGAAAATCCGTTAGAATAGATAACCAGCATCTATCGAATCAATTTTTAATCCCTGATCTAATCTATAA
TGAAAACCAGGATGGATTTATCGATGAATTGTTGCACTTGAGTACAAATGGTAAATTATATGTAACACTTCATCCTGATA
TAACGGGCGTTCATATATTTATCGGTGTTCAGTCAGAACGATCTTATCATTATGAAACTTCCGCCATCAATCATGCTCAA
TATGCAGTATTTCATTCAAGAGGACATCTAGATTATATTTTCAGTGAGATTTGGTATTCTATCGAAAAACAGGTGGATCT
TCAACTTAATTATTTGAGGAATGAGCAGTTTATATATGTCCTTCCTTCAGATTATGCATTCGACAACAACTTTAATAAAG
TAGAGCTATGGATTCCTATAGAGAGACAATTTTATTGA

Upstream 100 bases:

>100_bases
AGAAAATTACTCATCTTGTATTATCCTGATGCTAGTTATATTAACTACTTGCAATATTTCGATGAAATCACCCTGCTTCA
TACGATCAAGCTAGAGGACT

Downstream 100 bases:

>100_bases
AAAAGTTCAGATTATAAATTATCAAATAAACCAGAACAATACCGTACAGCGACAGTATTGTTCTGGTTTATTTTAATTTA
CTTATTATATTTTATAGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MIKTSRKCYTSMLLTTRFRKCEMMKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFHITQSFTMITGMTVEEYLHSR
KMTEAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHGTSPIQARANPEKLQMVHRLYLQLSTTTKPPAYYSIKRADH
TELVGKSVRIDNQHLSNQFLIPDLIYNENQDGFIDELLHLSTNGKLYVTLHPDITGVHIFIGVQSERSYHYETSAINHAQ
YAVFHSRGHLDYIFSEIWYSIEKQVDLQLNYLRNEQFIYVLPSDYAFDNNFNKVELWIPIERQFY

Sequences:

>Translated_305_residues
MIKTSRKCYTSMLLTTRFRKCEMMKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFHITQSFTMITGMTVEEYLHSR
KMTEAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHGTSPIQARANPEKLQMVHRLYLQLSTTTKPPAYYSIKRADH
TELVGKSVRIDNQHLSNQFLIPDLIYNENQDGFIDELLHLSTNGKLYVTLHPDITGVHIFIGVQSERSYHYETSAINHAQ
YAVFHSRGHLDYIFSEIWYSIEKQVDLQLNYLRNEQFIYVLPSDYAFDNNFNKVELWIPIERQFY
>Mature_305_residues
MIKTSRKCYTSMLLTTRFRKCEMMKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFHITQSFTMITGMTVEEYLHSR
KMTEAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHGTSPIQARANPEKLQMVHRLYLQLSTTTKPPAYYSIKRADH
TELVGKSVRIDNQHLSNQFLIPDLIYNENQDGFIDELLHLSTNGKLYVTLHPDITGVHIFIGVQSERSYHYETSAINHAQ
YAVFHSRGHLDYIFSEIWYSIEKQVDLQLNYLRNEQFIYVLPSDYAFDNNFNKVELWIPIERQFY

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35811; Mature: 35811

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTSRKCYTSMLLTTRFRKCEMMKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITQSFTMITGMTVEEYLHSRKMTEAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHG
HHHHHHHEECCCHHHHHHHHHHHHHHHHEECCCEEEEEEHHHCCCCCHHHHHHHHHHHCC
TSPIQARANPEKLQMVHRLYLQLSTTTKPPAYYSIKRADHTELVGKSVRIDNQHLSNQFL
CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCCHHHHCCEEEECCHHCCCCEE
IPDLIYNENQDGFIDELLHLSTNGKLYVTLHPDITGVHIFIGVQSERSYHYETSAINHAQ
CCHHEECCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCE
YAVFHSRGHLDYIFSEIWYSIEKQVDLQLNYLRNEQFIYVLPSDYAFDNNFNKVELWIPI
EEEEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEECCCCEEECCCCCEEEEEEEC
ERQFY
CCCCC
>Mature Secondary Structure
MIKTSRKCYTSMLLTTRFRKCEMMKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITQSFTMITGMTVEEYLHSRKMTEAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHG
HHHHHHHEECCCHHHHHHHHHHHHHHHHEECCCEEEEEEHHHCCCCCHHHHHHHHHHHCC
TSPIQARANPEKLQMVHRLYLQLSTTTKPPAYYSIKRADHTELVGKSVRIDNQHLSNQFL
CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCCHHHHCCEEEECCHHCCCCEE
IPDLIYNENQDGFIDELLHLSTNGKLYVTLHPDITGVHIFIGVQSERSYHYETSAINHAQ
CCHHEECCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCE
YAVFHSRGHLDYIFSEIWYSIEKQVDLQLNYLRNEQFIYVLPSDYAFDNNFNKVELWIPI
EEEEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEECCCCEEECCCCCEEEEEEEC
ERQFY
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]