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The map label for this gene is rimM

Identifier: 222151071

GI number: 222151071

Start: 896171

End: 896668

Strand: Direct

Name: rimM

Synonym: MCCL_0822

Alternate gene names: 222151071

Gene position: 896171-896668 (Clockwise)

Preceding gene: 222151070

Following gene: 222151072

Centisome position: 42.63

GC content: 36.35

Gene sequence:

>498_bases
ATGGAAATGAATGTAGGGAAAATCGTCAATACACACGGTGTGAAAGGCGAAGTAAAGATTTTAACGGCATCTGATTTTGC
CGCAGAACGTTTTAAGCCAGGTAAGGTGCTGATGATCCCATTTAAAAATGAGCGAGTTACGCTTACAATCAAATCGTATC
GTACCCACAAAAACTTCCATATGCTAGCATTTGAAGGTTTGAATAATATAAATGATGTAGAAAAGTATAAGGGCCTGGAT
GTCTATCAGGAGATTGAGAATGAAGATATTATATTGGACGAAAACGAATACTTCTATTCAGATATTATTGGGTGCACTGT
GTTTGATGGCGAACGCGAAATCGGTATTGTGAATGATATCTTTGAAACAGGAGCGAACGATGTATGGGTCGTTCAAGGAG
ATAAAGAATACTTGATTCCGTATATTGAAGATGTTGTTAAGTCAATCGATATTGATAATAAAAAAATCATCATCGAAGCG
ATCGAAGGGTTATTATAA

Upstream 100 bases:

>100_bases
CGAGTGGTGCAGAACTTGCGTCTGTTAAGAAAGTGTTTGTAGAGATTGATTAAGAGTACCTTTTTTGGTACTCTTTTTTT
ATGAGATGGAGGTTTGTGAA

Downstream 100 bases:

>100_bases
TGAAGATTGATTATTTAACATTATTCCCTGAAATGTTTGACGTACTGAATCATTCTATTATGAAACGTGCACAGGAAAAA
GGAATTGTAGAGCTGAACAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MEMNVGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFHMLAFEGLNNINDVEKYKGLD
VYQEIENEDIILDENEYFYSDIIGCTVFDGEREIGIVNDIFETGANDVWVVQGDKEYLIPYIEDVVKSIDIDNKKIIIEA
IEGLL

Sequences:

>Translated_165_residues
MEMNVGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFHMLAFEGLNNINDVEKYKGLD
VYQEIENEDIILDENEYFYSDIIGCTVFDGEREIGIVNDIFETGANDVWVVQGDKEYLIPYIEDVVKSIDIDNKKIIIEA
IEGLL
>Mature_165_residues
MEMNVGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFHMLAFEGLNNINDVEKYKGLD
VYQEIENEDIILDENEYFYSDIIGCTVFDGEREIGIVNDIFETGANDVWVVQGDKEYLIPYIEDVVKSIDIDNKKIIIEA
IEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_MACCJ (B9EBB8)

Other databases:

- EMBL:   AP009484
- RefSeq:   YP_002560225.1
- GeneID:   7390569
- GenomeReviews:   AP009484_GR
- KEGG:   mcl:MCCL_0822
- OMA:   NDVYWIK
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18882; Mature: 18882

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMNVGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFH
CCCCCCCEEECCCCCCEEEEEEECCCHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCEE
MLAFEGLNNINDVEKYKGLDVYQEIENEDIILDENEYFYSDIIGCTVFDGEREIGIVNDI
EEEECCCCCCCHHHHHCCCCHHHHCCCCCEEEECCCEEEHHEEEEEEECCCCCCCCHHHH
FETGANDVWVVQGDKEYLIPYIEDVVKSIDIDNKKIIIEAIEGLL
HHCCCCEEEEEECCCCEECHHHHHHHHHCCCCCCEEEEEEHHCCC
>Mature Secondary Structure
MEMNVGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFH
CCCCCCCEEECCCCCCEEEEEEECCCHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCEE
MLAFEGLNNINDVEKYKGLDVYQEIENEDIILDENEYFYSDIIGCTVFDGEREIGIVNDI
EEEECCCCCCCHHHHHCCCCHHHHCCCCCEEEECCCEEEHHEEEEEEECCCCCCCCHHHH
FETGANDVWVVQGDKEYLIPYIEDVVKSIDIDNKKIIIEAIEGLL
HHCCCCEEEEEECCCCEECHHHHHHHHHCCCCCCEEEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA