| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is yfiH [C]
Identifier: 222151009
GI number: 222151009
Start: 818820
End: 819749
Strand: Direct
Name: yfiH [C]
Synonym: MCCL_0759
Alternate gene names: 222151009
Gene position: 818820-819749 (Clockwise)
Preceding gene: 222151008
Following gene: 222151010
Centisome position: 38.95
GC content: 39.14
Gene sequence:
>930_bases ATGTACCAAGCTTTATCCGTGATCGTGGTTCAAGAACACGTCGATCAAGAAGATAATGAAAGCTTTAATATTAGGAGTGG ACCATTCTCATGTTCCACTCCTTTTTCAATATTGGGGGTCGTTATGGATATATTTAAAAGAAAAGCTGTTACGTTTAACT ATAAGGATGATGAACATATAATTGGTATTACAGGACGCAATGGTGGTGTCAGTGACTATCCAGAGCTTTCTTTGAATATG GCAAGATATATAGAAGATGCACCAGAAAATGTATCTCGCAATCAACAGCGTGTTGCTCAAGAAATCAATTTTGATACTTC AAAGTGGATATTTCCAATTCAAAAGCATGGAAATCATATTAAAGAAGTTTCATTAGAAGACAGAGGGATAAATATTACTG AATTGACCACGGCCCTGGACGATGTGGATGGCCTCTATACATATGATAGAGAAGTATTATTGACCATGTGTTTTGCAGAT TGTGTACCCATCTATATCTATAGTGCGACCGATAACTTTATCGCGCTTGGACATGCGGGTTGGCGTGGTACTGTAGGAAT GATCACCGAAAAGCTCATTAATGTATATAAAGGTGATAAGACACATCTGCATTGTGTGATCGGACCTTCAATCAGTGGCA AGGCATATGTCGTTAATGATGACATCAGAGCAAAGTTTATGTCACTGAATCTCCATCTGGAAGACTGCTTTAAACCGAAT GGTGATATGTATGAAATAGAGCTGAAAGAAATCAATAGACGTATCGCGCAGCATGCTGGTATTGCCGCTTCGCATATCCA TGTCTCACAGCGCTGTACCTCAACAGGAAATGAGGATTTCTTCTCATATCGAAAAGAAGCAGGTAATACCGGCAGGATGT TAGCTTATATCGGAAAGAGGGATAACAATGGAAGTCAGAAAGAATCTTGA
Upstream 100 bases:
>100_bases AGCTCATTTGGTCATTCAGCACCAGTGCCTGAGCGTGAAGTACGCAATGAAACACCGGTGCAGGAAACAAGAGAGCGTCA ATCAAGTGATGAAGGACTAG
Downstream 100 bases:
>100_bases CATAATTAAACAGGAAATTGAAAGTGCACTTCAGAAATCTGCTGATCACAAAGCTCCGACTATTATTGCAGTGACAAAAT ATGTTACAATAGACCGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES
Sequences:
>Translated_309_residues MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES >Mature_309_residues MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES
Specific function: Unknown
COG id: COG1496
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0124 family [H]
Homologues:
Organism=Homo sapiens, GI190194374, Length=268, Percent_Identity=25.7462686567164, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI190194372, Length=268, Percent_Identity=25.7462686567164, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1788945, Length=232, Percent_Identity=28.8793103448276, Blast_Score=110, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003730 - InterPro: IPR011324 [H]
Pfam domain/function: PF02578 Cu-oxidase_4 [H]
EC number: NA
Molecular weight: Translated: 34833; Mature: 34833
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHI CCCCEEEEEEHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEE IGITGRNGGVSDYPELSLNMARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHI EEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCEE KEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFADCVPIYIYSATDNFIALGHAG EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCC WRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEHHHCCCC GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKR CCEEEEEHHHHHHHHHHHCCCCHHEEEHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECC DNNGSQKES CCCCCCCCC >Mature Secondary Structure MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHI CCCCEEEEEEHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEE IGITGRNGGVSDYPELSLNMARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHI EEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCEE KEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFADCVPIYIYSATDNFIALGHAG EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCC WRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEHHHCCCC GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKR CCEEEEEHHHHHHHHHHHCCCCHHEEEHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECC DNNGSQKES CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA