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The map label for this gene is ylmE [H]

Identifier: 222151010

GI number: 222151010

Start: 819727

End: 820389

Strand: Direct

Name: ylmE [H]

Synonym: MCCL_0760

Alternate gene names: 222151010

Gene position: 819727-820389 (Clockwise)

Preceding gene: 222151009

Following gene: 222151011

Centisome position: 38.99

GC content: 39.97

Gene sequence:

>663_bases
ATGGAAGTCAGAAAGAATCTTGACATAATTAAACAGGAAATTGAAAGTGCACTTCAGAAATCTGCTGATCACAAAGCTCC
GACTATTATTGCAGTGACAAAATATGTTACAATAGACCGAGCAAAAGAGGCGATGGAAGCAGGTATCTGTCATCTTGGCG
AGAATAGAATTGAAGGCTTCCTGGAAAAACGTGAAGCTTTAGGTGATGCGACGATGCACTTTATAGGCACATTGCAATCA
CGTAAAGTTAAGGAGGTCATTAATCAGGTGGATTATCTGCATTCACTTGACCGATTGTCTCTTGCAAAGGAAATTGACAA
ACGTGCTGAAAAGACGATTAAATGTTTTGTACAGGTAAATGTTAGCGATGAACAGAGTAAACACGGAATTAAGAGAGATG
AAGTGATGGACTTTATTCATGGCTTAGCATCTTATAGTCAAATTGAAGTGGTTGGTTTAATGACGATGGCGCCAGCAGCT
GCAGATGAATCAGAACTAAGAAGATATTTTAAGACGATGAAGCAGCTGCAGCTAGAGGTTCAGAATGCACACCTATCTTA
TGCACCATGTACAGAATTATCGATGGGCATGAGTAATGATTATCAAATTGCAGTAGAAGAAGGTGCGACGTTTATTCGTA
TCGGTACGAAGCTCGTCGGTTAG

Upstream 100 bases:

>100_bases
CAGCGCTGTACCTCAACAGGAAATGAGGATTTCTTCTCATATCGAAAAGAAGCAGGTAATACCGGCAGGATGTTAGCTTA
TATCGGAAAGAGGGATAACA

Downstream 100 bases:

>100_bases
GAGGATATAATGGCTTTTAAAGATGTATTTAAAGGATTCTTTGCATATGAAGATGAAGAAGTTTATGTAGAGGAACAAAG
TGACAAAGTAAGAGAACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEVRKNLDIIKQEIESALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEGFLEKREALGDATMHFIGTLQS
RKVKEVINQVDYLHSLDRLSLAKEIDKRAEKTIKCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAA
ADESELRRYFKTMKQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG

Sequences:

>Translated_220_residues
MEVRKNLDIIKQEIESALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEGFLEKREALGDATMHFIGTLQS
RKVKEVINQVDYLHSLDRLSLAKEIDKRAEKTIKCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAA
ADESELRRYFKTMKQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG
>Mature_220_residues
MEVRKNLDIIKQEIESALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEGFLEKREALGDATMHFIGTLQS
RKVKEVINQVDYLHSLDRLSLAKEIDKRAEKTIKCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAA
ADESELRRYFKTMKQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=33.0143540669856, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI1789321, Length=230, Percent_Identity=31.304347826087, Blast_Score=110, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=189, Percent_Identity=31.7460317460317, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45550861, Length=233, Percent_Identity=30.4721030042918, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24745; Mature: 24745

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRKNLDIIKQEIESALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEGF
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LEKREALGDATMHFIGTLQSRKVKEVINQVDYLHSLDRLSLAKEIDKRAEKTIKCFVQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEC
VSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAAADESELRRYFKTMKQLQLEV
CCCCHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG
HHCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCHHCC
>Mature Secondary Structure
MEVRKNLDIIKQEIESALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEGF
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LEKREALGDATMHFIGTLQSRKVKEVINQVDYLHSLDRLSLAKEIDKRAEKTIKCFVQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEC
VSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAAADESELRRYFKTMKQLQLEV
CCCCHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG
HHCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]